Results 41 - 60 of 194 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5727 | 3' | -45.3 | NC_001806.1 | + | 1607 | 0.71 | 0.996901 |
Target: 5'- ------cGGGCCGCAGCGgc-GCGCCc -3' miRNA: 3'- cuuuuuuUUUGGUGUCGCguaCGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 119026 | 0.71 | 0.996901 |
Target: 5'- --------cGCCgugGCGGCGC-UGCGCCu -3' miRNA: 3'- cuuuuuuuuUGG---UGUCGCGuACGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 15509 | 0.71 | 0.997262 |
Target: 5'- --cAAAAAcACCACAGaCGCGgaucggggucuuuuUGUGCCa -3' miRNA: 3'- cuuUUUUUuUGGUGUC-GCGU--------------ACGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 41195 | 0.71 | 0.997406 |
Target: 5'- aGGAGcuGAACCGCAGC-CAgagccccGCGCCu -3' miRNA: 3'- cUUUUuuUUUGGUGUCGcGUa------CGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 119934 | 0.71 | 0.997406 |
Target: 5'- --------cGCCGCAgaacGCGuCGUGCGCCc -3' miRNA: 3'- cuuuuuuuuUGGUGU----CGC-GUACGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 113798 | 0.7 | 0.99784 |
Target: 5'- -----cGAGACC-CGGCGC-UGCuGCCa -3' miRNA: 3'- cuuuuuUUUUGGuGUCGCGuACG-CGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 75673 | 0.7 | 0.99784 |
Target: 5'- aGAGAGAAGAUgGCGGCcCAgcGCGCCc -3' miRNA: 3'- cUUUUUUUUUGgUGUCGcGUa-CGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 1923 | 0.7 | 0.99784 |
Target: 5'- -----cGAGGCCagcaccguGCGGCGCAggucccGCGCCg -3' miRNA: 3'- cuuuuuUUUUGG--------UGUCGCGUa-----CGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 2660 | 0.7 | 0.998212 |
Target: 5'- -----cAGGGCgGCGGcCGCggGCGCCg -3' miRNA: 3'- cuuuuuUUUUGgUGUC-GCGuaCGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 29209 | 0.7 | 0.998212 |
Target: 5'- gGggGGAGcGACgAgGGCGacguGUGCGCCg -3' miRNA: 3'- -CuuUUUUuUUGgUgUCGCg---UACGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 43293 | 0.7 | 0.998212 |
Target: 5'- cGGAGGcgGAGCCGCGGCuGCAggagGC-CCu -3' miRNA: 3'- -CUUUUuuUUUGGUGUCG-CGUa---CGcGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 121405 | 0.7 | 0.998212 |
Target: 5'- -----cGGAGCCG-GGCGCGugcUGCGCCu -3' miRNA: 3'- cuuuuuUUUUGGUgUCGCGU---ACGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 71967 | 0.7 | 0.998212 |
Target: 5'- ------uGGGCCGCcGCGCAUGUGUUc -3' miRNA: 3'- cuuuuuuUUUGGUGuCGCGUACGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 92477 | 0.7 | 0.998529 |
Target: 5'- -----cGAGGCCGCcaaGGCGCggGuCGCCa -3' miRNA: 3'- cuuuuuUUUUGGUG---UCGCGuaC-GCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 65228 | 0.7 | 0.998529 |
Target: 5'- ----cGAAuACCGCAGaGCG-GCGCCg -3' miRNA: 3'- cuuuuUUUuUGGUGUCgCGUaCGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 26796 | 0.7 | 0.998529 |
Target: 5'- ---cGGAGcACCugGcGCGCcUGCGCCu -3' miRNA: 3'- cuuuUUUUuUGGugU-CGCGuACGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 8722 | 0.7 | 0.998721 |
Target: 5'- cGAGGAGAcAGGCgaucaccaugccgaCGCAGCGgGUGCGUCu -3' miRNA: 3'- -CUUUUUU-UUUG--------------GUGUCGCgUACGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 33373 | 0.7 | 0.998796 |
Target: 5'- ---cGGAGAGCCGCGGCaccCGgacGCGCCc -3' miRNA: 3'- cuuuUUUUUUGGUGUCGc--GUa--CGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 24565 | 0.7 | 0.998796 |
Target: 5'- --------cGCCAUGGCGCccggcGCGCCg -3' miRNA: 3'- cuuuuuuuuUGGUGUCGCGua---CGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 40569 | 0.7 | 0.998796 |
Target: 5'- uGAAAaugGAAGcGCCGCGGgucgGCGUGCGCg -3' miRNA: 3'- -CUUU---UUUUuUGGUGUCg---CGUACGCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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