Results 41 - 60 of 194 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5727 | 3' | -45.3 | NC_001806.1 | + | 24719 | 0.67 | 0.999937 |
Target: 5'- --cGGAGGGACUuuuGCGCccGCGCCc -3' miRNA: 3'- cuuUUUUUUUGGuguCGCGuaCGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 24849 | 0.67 | 0.999966 |
Target: 5'- ------cGGGCCGCAGCGgCAccGUGCUg -3' miRNA: 3'- cuuuuuuUUUGGUGUCGC-GUa-CGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 24963 | 0.66 | 0.999986 |
Target: 5'- -cGAAGAcGACgGCGGCGCGUucgagggggacgggGUGCUg -3' miRNA: 3'- cuUUUUUuUUGgUGUCGCGUA--------------CGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 26796 | 0.7 | 0.998529 |
Target: 5'- ---cGGAGcACCugGcGCGCcUGCGCCu -3' miRNA: 3'- cuuuUUUUuUGGugU-CGCGuACGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 26974 | 0.68 | 0.999754 |
Target: 5'- --------cGCCGCGGCuCGUGgGCCc -3' miRNA: 3'- cuuuuuuuuUGGUGUCGcGUACgCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 27283 | 0.67 | 0.999966 |
Target: 5'- -------cGGCCGcCAGCGCGgcgGgGCCc -3' miRNA: 3'- cuuuuuuuUUGGU-GUCGCGUa--CgCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 28159 | 0.67 | 0.999925 |
Target: 5'- ----uGAGGGCCGCccccAGCGCGaggugaggggccggGCGCCa -3' miRNA: 3'- cuuuuUUUUUGGUG----UCGCGUa-------------CGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 29163 | 0.73 | 0.985959 |
Target: 5'- -cGAGGAAGACCccgGCAGuUGCGgggGCGCCc -3' miRNA: 3'- cuUUUUUUUUGG---UGUC-GCGUa--CGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 29209 | 0.7 | 0.998212 |
Target: 5'- gGggGGAGcGACgAgGGCGacguGUGCGCCg -3' miRNA: 3'- -CuuUUUUuUUGgUgUCGCg---UACGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 29451 | 0.66 | 0.999975 |
Target: 5'- --cGAGGAGGCCGuCAGgGCggGCacgGCCg -3' miRNA: 3'- cuuUUUUUUUGGU-GUCgCGuaCG---CGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 29959 | 0.71 | 0.995646 |
Target: 5'- ------cGAGCCGCGGCGCcgcgggggGCGUCu -3' miRNA: 3'- cuuuuuuUUUGGUGUCGCGua------CGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 30452 | 0.67 | 0.999933 |
Target: 5'- ---------cCCGCGGCGCcgcccccuccgGCGCCg -3' miRNA: 3'- cuuuuuuuuuGGUGUCGCGua---------CGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 30504 | 0.67 | 0.999937 |
Target: 5'- cGAGcAGGAGGCgGCGGUGCGUccgaggaagagGCGCg -3' miRNA: 3'- -CUUuUUUUUUGgUGUCGCGUA-----------CGCGg -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 31766 | 0.66 | 0.999994 |
Target: 5'- -----cAGAGCCGCGGCcCggGCuGCCu -3' miRNA: 3'- cuuuuuUUUUGGUGUCGcGuaCG-CGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 32919 | 0.99 | 0.109189 |
Target: 5'- gGAAAAAAAAACCACA-CGCAUGCGCCg -3' miRNA: 3'- -CUUUUUUUUUGGUGUcGCGUACGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 33290 | 0.72 | 0.990646 |
Target: 5'- cGAAAAAAcAGACCAgCGGCcgGCcgGCGCUu -3' miRNA: 3'- -CUUUUUU-UUUGGU-GUCG--CGuaCGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 33373 | 0.7 | 0.998796 |
Target: 5'- ---cGGAGAGCCGCGGCaccCGgacGCGCCc -3' miRNA: 3'- cuuuUUUUUUGGUGUCGc--GUa--CGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 33723 | 0.66 | 0.999994 |
Target: 5'- --------uGCCGCuugugAGUGCGcGCGCCg -3' miRNA: 3'- cuuuuuuuuUGGUG-----UCGCGUaCGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 35551 | 0.74 | 0.974415 |
Target: 5'- ------cGAGCCGCucGGCGCGcccgGCGCCg -3' miRNA: 3'- cuuuuuuUUUGGUG--UCGCGUa---CGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 35580 | 0.69 | 0.999365 |
Target: 5'- ------cGAACgACGuGCGCA-GCGCCg -3' miRNA: 3'- cuuuuuuUUUGgUGU-CGCGUaCGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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