Results 21 - 40 of 194 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5727 | 3' | -45.3 | NC_001806.1 | + | 135765 | 0.67 | 0.999937 |
Target: 5'- cGGAAGGccuggcGAAGCUGCGGCGCc--CGCCc -3' miRNA: 3'- -CUUUUU------UUUUGGUGUCGCGuacGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 135106 | 0.68 | 0.999685 |
Target: 5'- gGGGAGGGGGGCggggGCAGCGC-UGCGUg -3' miRNA: 3'- -CUUUUUUUUUGg---UGUCGCGuACGCGg -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 132658 | 0.66 | 0.999991 |
Target: 5'- -----cGGGGCCGCGGCcGCuuaCGCCg -3' miRNA: 3'- cuuuuuUUUUGGUGUCG-CGuacGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 132219 | 0.66 | 0.999987 |
Target: 5'- ---------cCCAguGCGCGUcCGCCg -3' miRNA: 3'- cuuuuuuuuuGGUguCGCGUAcGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 131193 | 0.69 | 0.999021 |
Target: 5'- -------cGACCACAGCGCc--UGCCg -3' miRNA: 3'- cuuuuuuuUUGGUGUCGCGuacGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 130976 | 0.75 | 0.961112 |
Target: 5'- -cGGAGGAAGCCGucaAGCGCGU-CGCCg -3' miRNA: 3'- cuUUUUUUUUGGUg--UCGCGUAcGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 129334 | 0.67 | 0.999966 |
Target: 5'- ---uGGAAAGCCuuCAuCGCGUGgGCCc -3' miRNA: 3'- cuuuUUUUUUGGu-GUcGCGUACgCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 128220 | 0.67 | 0.999966 |
Target: 5'- --cAGGGAuACCGCGGCGUcgGcCGUg -3' miRNA: 3'- cuuUUUUUuUGGUGUCGCGuaC-GCGg -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 127826 | 0.66 | 0.999987 |
Target: 5'- --cGGAAuGugCGCGgugucgcgugucGCGCAUGCGCa -3' miRNA: 3'- cuuUUUUuUugGUGU------------CGCGUACGCGg -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 126132 | 0.67 | 0.999916 |
Target: 5'- ---cGGAcGACgGCGGCgagGCcgGCGCCg -3' miRNA: 3'- cuuuUUUuUUGgUGUCG---CGuaCGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 125860 | 0.67 | 0.999889 |
Target: 5'- --------cGCCGCGGaCGCcgugGCGCCc -3' miRNA: 3'- cuuuuuuuuUGGUGUC-GCGua--CGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 125711 | 0.66 | 0.999987 |
Target: 5'- ----------gCGCGGCGUccGCGCCc -3' miRNA: 3'- cuuuuuuuuugGUGUCGCGuaCGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 125245 | 0.66 | 0.999981 |
Target: 5'- cGGAAAugGAGuCCACGGUaggcccaGCAUGUccGCCg -3' miRNA: 3'- -CUUUUuuUUU-GGUGUCG-------CGUACG--CGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 122282 | 0.67 | 0.999937 |
Target: 5'- cGAAAGGAGGCCagcgACAGCGCGaugagGgGCa -3' miRNA: 3'- cUUUUUUUUUGG----UGUCGCGUa----CgCGg -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 121405 | 0.7 | 0.998212 |
Target: 5'- -----cGGAGCCG-GGCGCGugcUGCGCCu -3' miRNA: 3'- cuuuuuUUUUGGUgUCGCGU---ACGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 120151 | 0.73 | 0.989246 |
Target: 5'- ----cGAAucUCACAGCGCcUGCGCUa -3' miRNA: 3'- cuuuuUUUuuGGUGUCGCGuACGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 119934 | 0.71 | 0.997406 |
Target: 5'- --------cGCCGCAgaacGCGuCGUGCGCCc -3' miRNA: 3'- cuuuuuuuuUGGUGU----CGC-GUACGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 119543 | 0.69 | 0.999365 |
Target: 5'- ------cAGGCCGuCAGCGgGgGCGCCa -3' miRNA: 3'- cuuuuuuUUUGGU-GUCGCgUaCGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 119026 | 0.71 | 0.996901 |
Target: 5'- --------cGCCgugGCGGCGC-UGCGCCu -3' miRNA: 3'- cuuuuuuuuUGG---UGUCGCGuACGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 118862 | 0.66 | 0.999975 |
Target: 5'- ------uGGugCACGGCGUuUGcCGCCu -3' miRNA: 3'- cuuuuuuUUugGUGUCGCGuAC-GCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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