miRNA display CGI


Results 41 - 60 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5727 3' -45.3 NC_001806.1 + 118244 0.68 0.999854
Target:  5'- cAAGAAcAGGCCGUGGCGUuuguGUGCGUCa -3'
miRNA:   3'- cUUUUUuUUUGGUGUCGCG----UACGCGG- -5'
5727 3' -45.3 NC_001806.1 + 116457 0.67 0.999889
Target:  5'- ----cGAGGGCCA-AGCGacggaCGUGCGCCu -3'
miRNA:   3'- cuuuuUUUUUGGUgUCGC-----GUACGCGG- -5'
5727 3' -45.3 NC_001806.1 + 115142 0.68 0.999754
Target:  5'- cAGGGAugGACCACGGC-CAgGaCGCCg -3'
miRNA:   3'- cUUUUUuuUUGGUGUCGcGUaC-GCGG- -5'
5727 3' -45.3 NC_001806.1 + 113798 0.7 0.99784
Target:  5'- -----cGAGACC-CGGCGC-UGCuGCCa -3'
miRNA:   3'- cuuuuuUUUUGGuGUCGCGuACG-CGG- -5'
5727 3' -45.3 NC_001806.1 + 113324 0.69 0.999482
Target:  5'- gGggGAGAuccAGGCCACcuGGCGCGUGgugaacggcaacuUGCCc -3'
miRNA:   3'- -CuuUUUU---UUUGGUG--UCGCGUAC-------------GCGG- -5'
5727 3' -45.3 NC_001806.1 + 113137 0.69 0.999494
Target:  5'- ----uGAAcGCCugGGgGCA-GCGCCu -3'
miRNA:   3'- cuuuuUUUuUGGugUCgCGUaCGCGG- -5'
5727 3' -45.3 NC_001806.1 + 112947 0.84 0.608093
Target:  5'- uGggGGAAGGACCGCcaGGUGC-UGCGCCu -3'
miRNA:   3'- -CuuUUUUUUUGGUG--UCGCGuACGCGG- -5'
5727 3' -45.3 NC_001806.1 + 112696 0.69 0.999599
Target:  5'- ------cAGACgAC-GCGCGUGCGCg -3'
miRNA:   3'- cuuuuuuUUUGgUGuCGCGUACGCGg -5'
5727 3' -45.3 NC_001806.1 + 111661 0.66 0.999982
Target:  5'- --------uGCCGCGGC-CAUgGUGCCg -3'
miRNA:   3'- cuuuuuuuuUGGUGUCGcGUA-CGCGG- -5'
5727 3' -45.3 NC_001806.1 + 111410 0.68 0.99981
Target:  5'- uGGAAcGAGGCCGCAGCcuucucCcgGUGCCu -3'
miRNA:   3'- cUUUUuUUUUGGUGUCGc-----GuaCGCGG- -5'
5727 3' -45.3 NC_001806.1 + 109371 0.66 0.999994
Target:  5'- ---------cCCGCuuGGCGCccGCGCCc -3'
miRNA:   3'- cuuuuuuuuuGGUG--UCGCGuaCGCGG- -5'
5727 3' -45.3 NC_001806.1 + 107044 0.67 0.999916
Target:  5'- -----cGGGGCCGCGG-GC-UGUGCCg -3'
miRNA:   3'- cuuuuuUUUUGGUGUCgCGuACGCGG- -5'
5727 3' -45.3 NC_001806.1 + 105948 0.77 0.915552
Target:  5'- ----cAAAAACCACcGCGCGgauuucugGCGCCg -3'
miRNA:   3'- cuuuuUUUUUGGUGuCGCGUa-------CGCGG- -5'
5727 3' -45.3 NC_001806.1 + 103645 0.67 0.999953
Target:  5'- -------uGGCCACGGgcaCGCAgaagaGCGCCg -3'
miRNA:   3'- cuuuuuuuUUGGUGUC---GCGUa----CGCGG- -5'
5727 3' -45.3 NC_001806.1 + 102267 0.66 0.999992
Target:  5'- uGAGGAAcgcGGCgGCGGCGCgGuuuaugucgucguggUGCGCCa -3'
miRNA:   3'- -CUUUUUuu-UUGgUGUCGCG-U---------------ACGCGG- -5'
5727 3' -45.3 NC_001806.1 + 101040 0.72 0.990646
Target:  5'- ----cGAAAAUCGCAGCGCugGCgGCCg -3'
miRNA:   3'- cuuuuUUUUUGGUGUCGCGuaCG-CGG- -5'
5727 3' -45.3 NC_001806.1 + 100894 0.69 0.999599
Target:  5'- --------cGCgCACAGCGCGacgUGCGCg -3'
miRNA:   3'- cuuuuuuuuUG-GUGUCGCGU---ACGCGg -5'
5727 3' -45.3 NC_001806.1 + 100387 0.66 0.999991
Target:  5'- --------cGCCggGCGGCGCggGgGCCg -3'
miRNA:   3'- cuuuuuuuuUGG--UGUCGCGuaCgCGG- -5'
5727 3' -45.3 NC_001806.1 + 99806 0.67 0.999916
Target:  5'- --------cACCugAGgGCGauagUGCGCCa -3'
miRNA:   3'- cuuuuuuuuUGGugUCgCGU----ACGCGG- -5'
5727 3' -45.3 NC_001806.1 + 99098 0.73 0.989246
Target:  5'- uAAAuAAAAACCACGGguguuaaacCGCAUGUGCa -3'
miRNA:   3'- cUUUuUUUUUGGUGUC---------GCGUACGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.