miRNA display CGI


Results 81 - 100 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5727 3' -45.3 NC_001806.1 + 80023 0.69 0.999209
Target:  5'- ------cGGGCCGCAGCG---GCGCCu -3'
miRNA:   3'- cuuuuuuUUUGGUGUCGCguaCGCGG- -5'
5727 3' -45.3 NC_001806.1 + 78333 0.76 0.938598
Target:  5'- cGAGcuGGGAACCG-AGCGCG-GCGCCg -3'
miRNA:   3'- -CUUuuUUUUUGGUgUCGCGUaCGCGG- -5'
5727 3' -45.3 NC_001806.1 + 77474 0.68 0.999685
Target:  5'- cAAGAGGccGAcCCGCAGaUGC-UGCGCCg -3'
miRNA:   3'- cUUUUUU--UUuGGUGUC-GCGuACGCGG- -5'
5727 3' -45.3 NC_001806.1 + 77368 0.67 0.999916
Target:  5'- -----cAAGGCCACaggccagacgGGCGCggGCGCg -3'
miRNA:   3'- cuuuuuUUUUGGUG----------UCGCGuaCGCGg -5'
5727 3' -45.3 NC_001806.1 + 77145 0.66 0.999987
Target:  5'- --uGGAGGAGCUcggGgGGCGCGUG-GCCc -3'
miRNA:   3'- cuuUUUUUUUGG---UgUCGCGUACgCGG- -5'
5727 3' -45.3 NC_001806.1 + 77099 0.66 0.999982
Target:  5'- --------uACCAgGGCGUccuggGCGCCa -3'
miRNA:   3'- cuuuuuuuuUGGUgUCGCGua---CGCGG- -5'
5727 3' -45.3 NC_001806.1 + 76563 0.76 0.943652
Target:  5'- cGGGAGGugcuGGCCGC-GCGCGaGCGCCg -3'
miRNA:   3'- -CUUUUUuu--UUGGUGuCGCGUaCGCGG- -5'
5727 3' -45.3 NC_001806.1 + 76435 0.66 0.999982
Target:  5'- ---uGAAGGA-CACGGCGUAcGCGCa -3'
miRNA:   3'- cuuuUUUUUUgGUGUCGCGUaCGCGg -5'
5727 3' -45.3 NC_001806.1 + 76297 0.66 0.999972
Target:  5'- cGGAGGAGAuauCCGCGGUGCGcaacgacccggcgGCgGCCg -3'
miRNA:   3'- -CUUUUUUUuu-GGUGUCGCGUa------------CG-CGG- -5'
5727 3' -45.3 NC_001806.1 + 75705 0.69 0.999365
Target:  5'- -------uAGCCACgAGCGC-UGgGCCg -3'
miRNA:   3'- cuuuuuuuUUGGUG-UCGCGuACgCGG- -5'
5727 3' -45.3 NC_001806.1 + 75673 0.7 0.99784
Target:  5'- aGAGAGAAGAUgGCGGCcCAgcGCGCCc -3'
miRNA:   3'- cUUUUUUUUUGgUGUCGcGUa-CGCGG- -5'
5727 3' -45.3 NC_001806.1 + 75558 0.67 0.999913
Target:  5'- cGAAGGGAcgGCCGgggaccacuccccCAGCGgGcGCGCCc -3'
miRNA:   3'- -CUUUUUUuuUGGU-------------GUCGCgUaCGCGG- -5'
5727 3' -45.3 NC_001806.1 + 74619 0.76 0.948426
Target:  5'- ----cAGAGGCCAC-GCGCAUG-GCCg -3'
miRNA:   3'- cuuuuUUUUUGGUGuCGCGUACgCGG- -5'
5727 3' -45.3 NC_001806.1 + 74503 0.66 0.999994
Target:  5'- ------cGAGCUGCGGCGCuucGaCGCCc -3'
miRNA:   3'- cuuuuuuUUUGGUGUCGCGua-C-GCGG- -5'
5727 3' -45.3 NC_001806.1 + 72347 0.66 0.999991
Target:  5'- ----cGGGAGCCAUGGUGUuuuucGUGCCg -3'
miRNA:   3'- cuuuuUUUUUGGUGUCGCGua---CGCGG- -5'
5727 3' -45.3 NC_001806.1 + 72020 0.66 0.999987
Target:  5'- ----cAGGGGCgCGCGGCGgAcUGCGCUg -3'
miRNA:   3'- cuuuuUUUUUG-GUGUCGCgU-ACGCGG- -5'
5727 3' -45.3 NC_001806.1 + 71967 0.7 0.998212
Target:  5'- ------uGGGCCGCcGCGCAUGUGUUc -3'
miRNA:   3'- cuuuuuuUUUGGUGuCGCGUACGCGG- -5'
5727 3' -45.3 NC_001806.1 + 70985 0.77 0.921739
Target:  5'- -------cGGCCAUccgagagguaauGGCGCAUGCGCCc -3'
miRNA:   3'- cuuuuuuuUUGGUG------------UCGCGUACGCGG- -5'
5727 3' -45.3 NC_001806.1 + 70850 0.68 0.999685
Target:  5'- ------cAAGCCGCGGCGCGgcCGCg -3'
miRNA:   3'- cuuuuuuUUUGGUGUCGCGUacGCGg -5'
5727 3' -45.3 NC_001806.1 + 70630 0.76 0.948426
Target:  5'- -----cGAAACCACGGCGCAccugggggUGUGCg -3'
miRNA:   3'- cuuuuuUUUUGGUGUCGCGU--------ACGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.