miRNA display CGI


Results 41 - 60 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5727 3' -45.3 NC_001806.1 + 145025 0.79 0.82978
Target:  5'- -------cGGCC-CGGCGCAUGCGCUg -3'
miRNA:   3'- cuuuuuuuUUGGuGUCGCGUACGCGG- -5'
5727 3' -45.3 NC_001806.1 + 37296 0.81 0.761185
Target:  5'- uGGAGAAAGGGCCGCAgGCGCGUG-GCg -3'
miRNA:   3'- -CUUUUUUUUUGGUGU-CGCGUACgCGg -5'
5727 3' -45.3 NC_001806.1 + 64944 0.81 0.74019
Target:  5'- ---uGAGGGACCAcCGGCGUcgGCGCCc -3'
miRNA:   3'- cuuuUUUUUUGGU-GUCGCGuaCGCGG- -5'
5727 3' -45.3 NC_001806.1 + 112947 0.84 0.608093
Target:  5'- uGggGGAAGGACCGCcaGGUGC-UGCGCCu -3'
miRNA:   3'- -CuuUUUUUUUGGUG--UCGCGuACGCGG- -5'
5727 3' -45.3 NC_001806.1 + 145577 0.89 0.390768
Target:  5'- uGGAAGGAAAugCACGGCGCGUGUGUa -3'
miRNA:   3'- -CUUUUUUUUugGUGUCGCGUACGCGg -5'
5727 3' -45.3 NC_001806.1 + 74619 0.76 0.948426
Target:  5'- ----cAGAGGCCAC-GCGCAUG-GCCg -3'
miRNA:   3'- cuuuuUUUUUGGUGuCGCGUACgCGG- -5'
5727 3' -45.3 NC_001806.1 + 92435 0.75 0.961112
Target:  5'- ----cAAGAGCCGCguguuguucgcgGGCGCGaGCGCCa -3'
miRNA:   3'- cuuuuUUUUUGGUG------------UCGCGUaCGCGG- -5'
5727 3' -45.3 NC_001806.1 + 101040 0.72 0.990646
Target:  5'- ----cGAAAAUCGCAGCGCugGCgGCCg -3'
miRNA:   3'- cuuuuUUUUUGGUGUCGCGuaCG-CGG- -5'
5727 3' -45.3 NC_001806.1 + 120151 0.73 0.989246
Target:  5'- ----cGAAucUCACAGCGCcUGCGCUa -3'
miRNA:   3'- cuuuuUUUuuGGUGUCGCGuACGCGG- -5'
5727 3' -45.3 NC_001806.1 + 99098 0.73 0.989246
Target:  5'- uAAAuAAAAACCACGGguguuaaacCGCAUGUGCa -3'
miRNA:   3'- cUUUuUUUUUGGUGUC---------GCGUACGCGg -5'
5727 3' -45.3 NC_001806.1 + 24302 0.73 0.989246
Target:  5'- -------uGGCCgGCGGCGCGggaccUGCGCCg -3'
miRNA:   3'- cuuuuuuuUUGG-UGUCGCGU-----ACGCGG- -5'
5727 3' -45.3 NC_001806.1 + 29163 0.73 0.985959
Target:  5'- -cGAGGAAGACCccgGCAGuUGCGgggGCGCCc -3'
miRNA:   3'- cuUUUUUUUUGG---UGUC-GCGUa--CGCGG- -5'
5727 3' -45.3 NC_001806.1 + 82980 0.73 0.981954
Target:  5'- ----uAAAGuUCGCuGGCGCGUGCGCCc -3'
miRNA:   3'- cuuuuUUUUuGGUG-UCGCGUACGCGG- -5'
5727 3' -45.3 NC_001806.1 + 23474 0.74 0.977145
Target:  5'- --------cGCCGCGGCGCAggcccgcccGCGCCc -3'
miRNA:   3'- cuuuuuuuuUGGUGUCGCGUa--------CGCGG- -5'
5727 3' -45.3 NC_001806.1 + 35551 0.74 0.974415
Target:  5'- ------cGAGCCGCucGGCGCGcccgGCGCCg -3'
miRNA:   3'- cuuuuuuUUUGGUG--UCGCGUa---CGCGG- -5'
5727 3' -45.3 NC_001806.1 + 3891 0.74 0.971455
Target:  5'- uGAuGAAGGAGCUGCuguuGCGCGcgGCGCCc -3'
miRNA:   3'- -CUuUUUUUUUGGUGu---CGCGUa-CGCGG- -5'
5727 3' -45.3 NC_001806.1 + 1791 0.75 0.968256
Target:  5'- ------cGGGCCGaAGCGCGUGCGCa -3'
miRNA:   3'- cuuuuuuUUUGGUgUCGCGUACGCGg -5'
5727 3' -45.3 NC_001806.1 + 3471 0.75 0.964811
Target:  5'- -------cGGCCugGGCGCG-GCGCCc -3'
miRNA:   3'- cuuuuuuuUUGGugUCGCGUaCGCGG- -5'
5727 3' -45.3 NC_001806.1 + 53626 0.75 0.964811
Target:  5'- aGAGGAGAcgagacAGACCGCAGUaCAcGCGCCu -3'
miRNA:   3'- -CUUUUUU------UUUGGUGUCGcGUaCGCGG- -5'
5727 3' -45.3 NC_001806.1 + 130976 0.75 0.961112
Target:  5'- -cGGAGGAAGCCGucaAGCGCGU-CGCCg -3'
miRNA:   3'- cuUUUUUUUUGGUg--UCGCGUAcGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.