miRNA display CGI


Results 1 - 20 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5727 3' -45.3 NC_001806.1 + 1607 0.71 0.996901
Target:  5'- ------cGGGCCGCAGCGgc-GCGCCc -3'
miRNA:   3'- cuuuuuuUUUGGUGUCGCguaCGCGG- -5'
5727 3' -45.3 NC_001806.1 + 1791 0.75 0.968256
Target:  5'- ------cGGGCCGaAGCGCGUGCGCa -3'
miRNA:   3'- cuuuuuuUUUGGUgUCGCGUACGCGg -5'
5727 3' -45.3 NC_001806.1 + 1923 0.7 0.99784
Target:  5'- -----cGAGGCCagcaccguGCGGCGCAggucccGCGCCg -3'
miRNA:   3'- cuuuuuUUUUGG--------UGUCGCGUa-----CGCGG- -5'
5727 3' -45.3 NC_001806.1 + 2077 0.68 0.999854
Target:  5'- ------uGAGCCGcCGGuCGCcgGCGCUg -3'
miRNA:   3'- cuuuuuuUUUGGU-GUC-GCGuaCGCGG- -5'
5727 3' -45.3 NC_001806.1 + 2524 0.67 0.999966
Target:  5'- cGGGGGcgGGCC-CGGCGCAccGCGCg -3'
miRNA:   3'- cUUUUUuuUUGGuGUCGCGUa-CGCGg -5'
5727 3' -45.3 NC_001806.1 + 2660 0.7 0.998212
Target:  5'- -----cAGGGCgGCGGcCGCggGCGCCg -3'
miRNA:   3'- cuuuuuUUUUGgUGUC-GCGuaCGCGG- -5'
5727 3' -45.3 NC_001806.1 + 2758 0.72 0.993016
Target:  5'- -------cGGCCACGGgGCGcgggcgggccUGCGCCg -3'
miRNA:   3'- cuuuuuuuUUGGUGUCgCGU----------ACGCGG- -5'
5727 3' -45.3 NC_001806.1 + 2860 0.67 0.99997
Target:  5'- cGggGAGGggggcgcgggcguccGAGCCgGgGGCGUccGCGCCg -3'
miRNA:   3'- -CuuUUUU---------------UUUGG-UgUCGCGuaCGCGG- -5'
5727 3' -45.3 NC_001806.1 + 3006 0.67 0.999962
Target:  5'- -------cGGCCGcCAGCGCgucggcggcguccgGUGCGCUg -3'
miRNA:   3'- cuuuuuuuUUGGU-GUCGCG--------------UACGCGG- -5'
5727 3' -45.3 NC_001806.1 + 3163 0.66 0.999991
Target:  5'- ------cAGGCuCACGGCGCGcacgGCgGCCa -3'
miRNA:   3'- cuuuuuuUUUG-GUGUCGCGUa---CG-CGG- -5'
5727 3' -45.3 NC_001806.1 + 3274 0.67 0.999889
Target:  5'- -------cAGCCACGcGCGCAggcgggGCGCg -3'
miRNA:   3'- cuuuuuuuUUGGUGU-CGCGUa-----CGCGg -5'
5727 3' -45.3 NC_001806.1 + 3471 0.75 0.964811
Target:  5'- -------cGGCCugGGCGCG-GCGCCc -3'
miRNA:   3'- cuuuuuuuUUGGugUCGCGUaCGCGG- -5'
5727 3' -45.3 NC_001806.1 + 3795 0.78 0.871814
Target:  5'- -------uGGCCACGGCggccgccGCGUGCGCCa -3'
miRNA:   3'- cuuuuuuuUUGGUGUCG-------CGUACGCGG- -5'
5727 3' -45.3 NC_001806.1 + 3891 0.74 0.971455
Target:  5'- uGAuGAAGGAGCUGCuguuGCGCGcgGCGCCc -3'
miRNA:   3'- -CUuUUUUUUUGGUGu---CGCGUa-CGCGG- -5'
5727 3' -45.3 NC_001806.1 + 4183 0.69 0.999494
Target:  5'- gGggGcgGGGGCC-CGGCGCcgG-GCCa -3'
miRNA:   3'- -CuuUuuUUUUGGuGUCGCGuaCgCGG- -5'
5727 3' -45.3 NC_001806.1 + 4836 0.67 0.999966
Target:  5'- -----cGAGGCCGCGGgGUcggGCGUCg -3'
miRNA:   3'- cuuuuuUUUUGGUGUCgCGua-CGCGG- -5'
5727 3' -45.3 NC_001806.1 + 8625 0.66 0.999975
Target:  5'- gGGAAGAGAGACgACAagaaggacGCGCGUGUcgauGCg -3'
miRNA:   3'- -CUUUUUUUUUGgUGU--------CGCGUACG----CGg -5'
5727 3' -45.3 NC_001806.1 + 8722 0.7 0.998721
Target:  5'- cGAGGAGAcAGGCgaucaccaugccgaCGCAGCGgGUGCGUCu -3'
miRNA:   3'- -CUUUUUU-UUUG--------------GUGUCGCgUACGCGG- -5'
5727 3' -45.3 NC_001806.1 + 10111 0.67 0.999966
Target:  5'- ---------cUCGCGGCGCAcgGCGCg -3'
miRNA:   3'- cuuuuuuuuuGGUGUCGCGUa-CGCGg -5'
5727 3' -45.3 NC_001806.1 + 10728 0.68 0.99981
Target:  5'- -----cGGGACCGgAGCGCGcaUGCacGCCg -3'
miRNA:   3'- cuuuuuUUUUGGUgUCGCGU--ACG--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.