Results 21 - 40 of 194 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5727 | 3' | -45.3 | NC_001806.1 | + | 132219 | 0.66 | 0.999987 |
Target: 5'- ---------cCCAguGCGCGUcCGCCg -3' miRNA: 3'- cuuuuuuuuuGGUguCGCGUAcGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 93981 | 0.66 | 0.999987 |
Target: 5'- -------cGGCCGCGGUaCAgaucgGCGCCg -3' miRNA: 3'- cuuuuuuuUUGGUGUCGcGUa----CGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 77145 | 0.66 | 0.999987 |
Target: 5'- --uGGAGGAGCUcggGgGGCGCGUG-GCCc -3' miRNA: 3'- cuuUUUUUUUGG---UgUCGCGUACgCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 127826 | 0.66 | 0.999987 |
Target: 5'- --cGGAAuGugCGCGgugucgcgugucGCGCAUGCGCa -3' miRNA: 3'- cuuUUUUuUugGUGU------------CGCGUACGCGg -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 125711 | 0.66 | 0.999987 |
Target: 5'- ----------gCGCGGCGUccGCGCCc -3' miRNA: 3'- cuuuuuuuuugGUGUCGCGuaCGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 23347 | 0.66 | 0.999987 |
Target: 5'- cGAAGacGAAGAAgaGCGGCGCGgaCGCCc -3' miRNA: 3'- -CUUU--UUUUUUggUGUCGCGUacGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 24963 | 0.66 | 0.999986 |
Target: 5'- -cGAAGAcGACgGCGGCGCGUucgagggggacgggGUGCUg -3' miRNA: 3'- cuUUUUUuUUGgUGUCGCGUA--------------CGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 151151 | 0.66 | 0.999982 |
Target: 5'- ---------gUCGCAgGCGCAggcGCGCCa -3' miRNA: 3'- cuuuuuuuuuGGUGU-CGCGUa--CGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 37918 | 0.66 | 0.999982 |
Target: 5'- --------cGCCAUgggGGCGCcgGgGCCg -3' miRNA: 3'- cuuuuuuuuUGGUG---UCGCGuaCgCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 89613 | 0.66 | 0.999982 |
Target: 5'- aGGAGAGugacguAGCCGguGgGCGUG-GCCg -3' miRNA: 3'- -CUUUUUuu----UUGGUguCgCGUACgCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 77099 | 0.66 | 0.999982 |
Target: 5'- --------uACCAgGGCGUccuggGCGCCa -3' miRNA: 3'- cuuuuuuuuUGGUgUCGCGua---CGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 76435 | 0.66 | 0.999982 |
Target: 5'- ---uGAAGGA-CACGGCGUAcGCGCa -3' miRNA: 3'- cuuuUUUUUUgGUGUCGCGUaCGCGg -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 111661 | 0.66 | 0.999982 |
Target: 5'- --------uGCCGCGGC-CAUgGUGCCg -3' miRNA: 3'- cuuuuuuuuUGGUGUCGcGUA-CGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 125245 | 0.66 | 0.999981 |
Target: 5'- cGGAAAugGAGuCCACGGUaggcccaGCAUGUccGCCg -3' miRNA: 3'- -CUUUUuuUUU-GGUGUCG-------CGUACG--CGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 8625 | 0.66 | 0.999975 |
Target: 5'- gGGAAGAGAGACgACAagaaggacGCGCGUGUcgauGCg -3' miRNA: 3'- -CUUUUUUUUUGgUGU--------CGCGUACG----CGg -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 118862 | 0.66 | 0.999975 |
Target: 5'- ------uGGugCACGGCGUuUGcCGCCu -3' miRNA: 3'- cuuuuuuUUugGUGUCGCGuAC-GCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 145728 | 0.66 | 0.999975 |
Target: 5'- -------uGGCCGC-GCGgGUGCGCg -3' miRNA: 3'- cuuuuuuuUUGGUGuCGCgUACGCGg -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 29451 | 0.66 | 0.999975 |
Target: 5'- --cGAGGAGGCCGuCAGgGCggGCacgGCCg -3' miRNA: 3'- cuuUUUUUUUGGU-GUCgCGuaCG---CGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 83484 | 0.66 | 0.999975 |
Target: 5'- ----cAAAuGCCugGGgGCGccccacUGCGCCg -3' miRNA: 3'- cuuuuUUUuUGGugUCgCGU------ACGCGG- -5' |
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5727 | 3' | -45.3 | NC_001806.1 | + | 85016 | 0.66 | 0.999975 |
Target: 5'- cGAGGAGAucGCCAUcguGCGCucgcucucgGUGCCc -3' miRNA: 3'- -CUUUUUUuuUGGUGu--CGCGua-------CGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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