Results 61 - 80 of 156 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5727 | 5' | -69.9 | NC_001806.1 | + | 28505 | 0.7 | 0.186363 |
Target: 5'- -uGGCCCCuuugacucagacgcaGGGcCCGGGGUCgCCgUGGGa -3' miRNA: 3'- ccCCGGGG---------------CCC-GGCCCCGG-GGaACCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 147665 | 0.7 | 0.180537 |
Target: 5'- cGGGcggccggcuccGCCCCggGGGCCGGGGCgCg--GGGg -3' miRNA: 3'- -CCC-----------CGGGG--CCCGGCCCCGgGgaaCCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 55257 | 0.7 | 0.179309 |
Target: 5'- -cGGCgCCCGGGCCGGc-CCCCUccgcccagagcacgUGGGg -3' miRNA: 3'- ccCCG-GGGCCCGGCCccGGGGA--------------ACCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 56694 | 0.7 | 0.176474 |
Target: 5'- cGGGGgcccgggaaCCCCGGGUCGcucuGGGUCCUccGGGg -3' miRNA: 3'- -CCCC---------GGGGCCCGGC----CCCGGGGaaCCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 73987 | 0.7 | 0.176474 |
Target: 5'- --cGCCCC-GGCCGGggcGGCCCCgcagGGGg -3' miRNA: 3'- cccCGGGGcCCGGCC---CCGGGGaa--CCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 28288 | 0.69 | 0.22095 |
Target: 5'- gGGGGaCCCCcacucauacacgGGaGCCGGGcGCCaUgUUGGGg -3' miRNA: 3'- -CCCC-GGGG------------CC-CGGCCC-CGG-GgAACCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 71079 | 0.69 | 0.225889 |
Target: 5'- aGGGGCCUgGGgggacuacaGCCucGGCCCCcUGGGc -3' miRNA: 3'- -CCCCGGGgCC---------CGGccCCGGGGaACCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 125954 | 0.69 | 0.229906 |
Target: 5'- cGGGGCCucacgaCCGcauccacccuccGCUGGGGCCCCcaGGGu -3' miRNA: 3'- -CCCCGG------GGCc-----------CGGCCCCGGGGaaCCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 24336 | 0.69 | 0.23092 |
Target: 5'- -uGGCCUCGGGCCGcguguucGGCCCg--GGGg -3' miRNA: 3'- ccCCGGGGCCCGGCc------CCGGGgaaCCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 37585 | 0.69 | 0.23092 |
Target: 5'- aGGGCCCUccuuGGCCcgccagcaccGGGGCCCag-GGGc -3' miRNA: 3'- cCCCGGGGc---CCGG----------CCCCGGGgaaCCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 45394 | 0.69 | 0.23092 |
Target: 5'- gGGGGCCCUGGuGCCcuuuuauguaGGcauGGCCUCgaUGGGc -3' miRNA: 3'- -CCCCGGGGCC-CGG----------CC---CCGGGGa-ACCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 96394 | 0.69 | 0.22095 |
Target: 5'- gGGGGCgCCGGugguucGUCGuauGGGCgCUCUUGGGg -3' miRNA: 3'- -CCCCGgGGCC------CGGC---CCCG-GGGAACCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 65678 | 0.69 | 0.216585 |
Target: 5'- uGGGGCCgCCGGccuccugucccccaaCCGGGGCCCgCgcuucgacGGGa -3' miRNA: 3'- -CCCCGG-GGCCc--------------GGCCCCGGG-Gaa------CCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 120864 | 0.69 | 0.216105 |
Target: 5'- cGGcGGCCCCuGGcGCCGccuGGUCCCccGGGg -3' miRNA: 3'- -CC-CCGGGG-CC-CGGCc--CCGGGGaaCCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 37787 | 0.69 | 0.216105 |
Target: 5'- cGGGG-CCgGGGCgCGGGGgUCCgcGGGc -3' miRNA: 3'- -CCCCgGGgCCCG-GCCCCgGGGaaCCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 23108 | 0.69 | 0.216105 |
Target: 5'- cGGGGCCCUGGGCCccGcGCUgCCgcGGGa -3' miRNA: 3'- -CCCCGGGGCCCGGccC-CGG-GGaaCCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 147207 | 0.69 | 0.215625 |
Target: 5'- -cGGCCCCGGcGgCGGaagaggcGGCCCCcgcgGGGg -3' miRNA: 3'- ccCCGGGGCC-CgGCC-------CCGGGGaa--CCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 4061 | 0.69 | 0.21135 |
Target: 5'- cGGGcGCCCacaCGGccGCCGGGGCgCCCgaGGc -3' miRNA: 3'- -CCC-CGGG---GCC--CGGCCCCG-GGGaaCCc -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 150886 | 0.69 | 0.206686 |
Target: 5'- aGGGCCCgggcaCGGGCCucGGGCCCCa---- -3' miRNA: 3'- cCCCGGG-----GCCCGGc-CCCGGGGaaccc -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 132511 | 0.69 | 0.23092 |
Target: 5'- cGGGGCCCUGGcccccgucuuuGCCuuucuGGGGCCCgagUUUGaGGu -3' miRNA: 3'- -CCCCGGGGCC-----------CGG-----CCCCGGG---GAAC-CC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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