Results 81 - 100 of 156 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5727 | 5' | -69.9 | NC_001806.1 | + | 147207 | 0.69 | 0.215625 |
Target: 5'- -cGGCCCCGGcGgCGGaagaggcGGCCCCcgcgGGGg -3' miRNA: 3'- ccCCGGGGCC-CgGCC-------CCGGGGaa--CCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 23108 | 0.69 | 0.216105 |
Target: 5'- cGGGGCCCUGGGCCccGcGCUgCCgcGGGa -3' miRNA: 3'- -CCCCGGGGCCCGGccC-CGG-GGaaCCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 37787 | 0.69 | 0.216105 |
Target: 5'- cGGGG-CCgGGGCgCGGGGgUCCgcGGGc -3' miRNA: 3'- -CCCCgGGgCCCG-GCCCCgGGGaaCCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 120864 | 0.69 | 0.216105 |
Target: 5'- cGGcGGCCCCuGGcGCCGccuGGUCCCccGGGg -3' miRNA: 3'- -CC-CCGGGG-CC-CGGCc--CCGGGGaaCCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 65678 | 0.69 | 0.216585 |
Target: 5'- uGGGGCCgCCGGccuccugucccccaaCCGGGGCCCgCgcuucgacGGGa -3' miRNA: 3'- -CCCCGG-GGCCc--------------GGCCCCGGG-Gaa------CCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 96394 | 0.69 | 0.22095 |
Target: 5'- gGGGGCgCCGGugguucGUCGuauGGGCgCUCUUGGGg -3' miRNA: 3'- -CCCCGgGGCC------CGGC---CCCG-GGGAACCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 28288 | 0.69 | 0.22095 |
Target: 5'- gGGGGaCCCCcacucauacacgGGaGCCGGGcGCCaUgUUGGGg -3' miRNA: 3'- -CCCC-GGGG------------CC-CGGCCC-CGG-GgAACCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 28161 | 0.68 | 0.250362 |
Target: 5'- aGGGccGCCCCcagcgcgaggugagGGGCCGGGcGCCaugucUGGGg -3' miRNA: 3'- -CCC--CGGGG--------------CCCGGCCC-CGGgga--ACCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 79250 | 0.68 | 0.251451 |
Target: 5'- -cGGCCCUguggaccuuguugGGGCgGaGGGCUCgUUGGGg -3' miRNA: 3'- ccCCGGGG-------------CCCGgC-CCCGGGgAACCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 25941 | 0.68 | 0.251997 |
Target: 5'- cGGGCgUgGGGgCGGGGCCgCgggagcgGGGg -3' miRNA: 3'- cCCCGgGgCCCgGCCCCGGgGaa-----CCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 23461 | 0.68 | 0.254189 |
Target: 5'- cGGcGCCCCGGGCCGccgcGGcgcaggcccgcccgcGCCCCgUGGc -3' miRNA: 3'- cCC-CGGGGCCCGGC----CC---------------CGGGGaACCc -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 24802 | 0.68 | 0.263117 |
Target: 5'- gGGGGCCCUGccGCCGGcGCCgCCc-GGGa -3' miRNA: 3'- -CCCCGGGGCc-CGGCCcCGG-GGaaCCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 77249 | 0.68 | 0.248737 |
Target: 5'- gGGGGCCUguuggcggaauucgaCGcgguGGCCGGggaccuGGCCCCaUGGGc -3' miRNA: 3'- -CCCCGGG---------------GC----CCGGCC------CCGGGGaACCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 22106 | 0.68 | 0.246583 |
Target: 5'- uGGGCgacagccgCCCGGGCCucuggGGGGCgCCCgaGGcGg -3' miRNA: 3'- cCCCG--------GGGCCCGG-----CCCCG-GGGaaCC-C- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 144906 | 0.68 | 0.246583 |
Target: 5'- cGGGuUCCCGGcCCGGGGCCUgagaugaacaCUcGGGg -3' miRNA: 3'- cCCC-GGGGCCcGGCCCCGGG----------GAaCCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 94202 | 0.68 | 0.246583 |
Target: 5'- uGGaGGCCCa-GGCCGGGGCCUUUc--- -3' miRNA: 3'- -CC-CCGGGgcCCGGCCCCGGGGAaccc -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 144821 | 0.68 | 0.246583 |
Target: 5'- aGGGGCCCCcgaccgcgGcGGUCcGGGCCCCguccGGa -3' miRNA: 3'- -CCCCGGGG--------C-CCGGcCCCGGGGaa--CCc -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 77112 | 0.68 | 0.241267 |
Target: 5'- uGGGCgCCaagagcgccgagCGGGCCGGGGCCguggaggagcUCggGGGg -3' miRNA: 3'- cCCCG-GG------------GCCCGGCCCCGG----------GGaaCCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 123755 | 0.68 | 0.241267 |
Target: 5'- cGGGGCCuCCGGGCgccccaGcGGCCCCUc--- -3' miRNA: 3'- -CCCCGG-GGCCCGg-----CcCCGGGGAaccc -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 119601 | 0.68 | 0.263117 |
Target: 5'- uGGaGCCCCccGGCgGGGGCCgCUUUGuGGc -3' miRNA: 3'- cCC-CGGGGc-CCGgCCCCGG-GGAAC-CC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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