miRNA display CGI


Results 41 - 60 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5727 5' -69.9 NC_001806.1 + 25540 0.72 0.133748
Target:  5'- uGGGGCCggggaGGGCUGGGGCCg---GGGa -3'
miRNA:   3'- -CCCCGGgg---CCCGGCCCCGGggaaCCC- -5'
5727 5' -69.9 NC_001806.1 + 65626 0.72 0.13884
Target:  5'- uGGuGGCCgUGGGCgagaGGGGCCCCggcggccucccccUGGGu -3'
miRNA:   3'- -CC-CCGGgGCCCGg---CCCCGGGGa------------ACCC- -5'
5727 5' -69.9 NC_001806.1 + 3351 0.72 0.143441
Target:  5'- gGGGGCUggCGGGCCGGGccccggccaGCCCC--GGGa -3'
miRNA:   3'- -CCCCGGg-GCCCGGCCC---------CGGGGaaCCC- -5'
5727 5' -69.9 NC_001806.1 + 34412 0.72 0.143441
Target:  5'- cGGGCCgggCCGGGCCGGG-CCgggCCgggUGGGc -3'
miRNA:   3'- cCCCGG---GGCCCGGCCCcGG---GGa--ACCC- -5'
5727 5' -69.9 NC_001806.1 + 39182 0.72 0.143441
Target:  5'- --cGCCCCGGGgCGGcGGCCUugucugcguuCUUGGGg -3'
miRNA:   3'- cccCGGGGCCCgGCC-CCGGG----------GAACCC- -5'
5727 5' -69.9 NC_001806.1 + 125848 0.72 0.14818
Target:  5'- cGGGCCCCcGGCCgccgcGGacgccguggcgccccGGCCCCUcaUGGGg -3'
miRNA:   3'- cCCCGGGGcCCGG-----CC---------------CCGGGGA--ACCC- -5'
5727 5' -69.9 NC_001806.1 + 2700 0.71 0.155199
Target:  5'- gGGGGCugccgccgccagccgCCCaggGGGUCGGGGCCCUcgGcGGg -3'
miRNA:   3'- -CCCCG---------------GGG---CCCGGCCCCGGGGaaC-CC- -5'
5727 5' -69.9 NC_001806.1 + 2942 0.71 0.156277
Target:  5'- gGGcGGCCgggCCGGGCCGGGacucuugcgcuugcGCCCCUcccgcggcgcgGGGa -3'
miRNA:   3'- -CC-CCGG---GGCCCGGCCC--------------CGGGGAa----------CCC- -5'
5727 5' -69.9 NC_001806.1 + 144967 0.71 0.157362
Target:  5'- uGGcGG-CCCGGcCCGGGGCCCCggcGGa -3'
miRNA:   3'- -CC-CCgGGGCCcGGCCCCGGGGaa-CCc -5'
5727 5' -69.9 NC_001806.1 + 147301 0.71 0.157362
Target:  5'- gGGGGUCCCGGGCCcacccuGGccgcgcccccccGGCCCUgagucggagGGGg -3'
miRNA:   3'- -CCCCGGGGCCCGG------CC------------CCGGGGaa-------CCC- -5'
5727 5' -69.9 NC_001806.1 + 147704 0.71 0.162517
Target:  5'- cGGGCCCCGGaggcggcgcucgcacGCaCGGGGCCacggCCgcgcgGGGg -3'
miRNA:   3'- cCCCGGGGCC---------------CG-GCCCCGG----GGaa---CCC- -5'
5727 5' -69.9 NC_001806.1 + 138841 0.71 0.164772
Target:  5'- uGGGGCCgCGGGaCgGGGGCCCg----- -3'
miRNA:   3'- -CCCCGGgGCCC-GgCCCCGGGgaaccc -5'
5727 5' -69.9 NC_001806.1 + 22047 0.71 0.164772
Target:  5'- cGGGGagccguggCCCGGcGCCGGGcccccGCCCCcgGGGc -3'
miRNA:   3'- -CCCCg-------GGGCC-CGGCCC-----CGGGGaaCCC- -5'
5727 5' -69.9 NC_001806.1 + 106645 0.71 0.168593
Target:  5'- cGGGCCagacgcuagaUCGGGUCGGGGaCCCCgcGGa -3'
miRNA:   3'- cCCCGG----------GGCCCGGCCCC-GGGGaaCCc -5'
5727 5' -69.9 NC_001806.1 + 5110 0.71 0.168593
Target:  5'- uGGGGCCCgGGgaGCCGGGGCgCUgCUUGu- -3'
miRNA:   3'- -CCCCGGGgCC--CGGCCCCG-GG-GAACcc -5'
5727 5' -69.9 NC_001806.1 + 119526 0.71 0.170144
Target:  5'- aGGGcGCCCUGGuucaccaggccgucaGCgGGGGCgCCaUGGGg -3'
miRNA:   3'- -CCC-CGGGGCC---------------CGgCCCCGgGGaACCC- -5'
5727 5' -69.9 NC_001806.1 + 73987 0.7 0.176474
Target:  5'- --cGCCCC-GGCCGGggcGGCCCCgcagGGGg -3'
miRNA:   3'- cccCGGGGcCCGGCC---CCGGGGaa--CCC- -5'
5727 5' -69.9 NC_001806.1 + 56694 0.7 0.176474
Target:  5'- cGGGGgcccgggaaCCCCGGGUCGcucuGGGUCCUccGGGg -3'
miRNA:   3'- -CCCC---------GGGGCCCGGC----CCCGGGGaaCCC- -5'
5727 5' -69.9 NC_001806.1 + 55257 0.7 0.179309
Target:  5'- -cGGCgCCCGGGCCGGc-CCCCUccgcccagagcacgUGGGg -3'
miRNA:   3'- ccCCG-GGGCCCGGCCccGGGGA--------------ACCC- -5'
5727 5' -69.9 NC_001806.1 + 147665 0.7 0.180537
Target:  5'- cGGGcggccggcuccGCCCCggGGGCCGGGGCgCg--GGGg -3'
miRNA:   3'- -CCC-----------CGGGG--CCCGGCCCCGgGgaaCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.