miRNA display CGI


Results 61 - 80 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5727 5' -69.9 NC_001806.1 + 28161 0.68 0.250362
Target:  5'- aGGGccGCCCCcagcgcgaggugagGGGCCGGGcGCCaugucUGGGg -3'
miRNA:   3'- -CCC--CGGGG--------------CCCGGCCC-CGGgga--ACCC- -5'
5727 5' -69.9 NC_001806.1 + 77249 0.68 0.248737
Target:  5'- gGGGGCCUguuggcggaauucgaCGcgguGGCCGGggaccuGGCCCCaUGGGc -3'
miRNA:   3'- -CCCCGGG---------------GC----CCGGCC------CCGGGGaACCC- -5'
5727 5' -69.9 NC_001806.1 + 94202 0.68 0.246583
Target:  5'- uGGaGGCCCa-GGCCGGGGCCUUUc--- -3'
miRNA:   3'- -CC-CCGGGgcCCGGCCCCGGGGAaccc -5'
5727 5' -69.9 NC_001806.1 + 144906 0.68 0.246583
Target:  5'- cGGGuUCCCGGcCCGGGGCCUgagaugaacaCUcGGGg -3'
miRNA:   3'- cCCC-GGGGCCcGGCCCCGGG----------GAaCCC- -5'
5727 5' -69.9 NC_001806.1 + 22106 0.68 0.246583
Target:  5'- uGGGCgacagccgCCCGGGCCucuggGGGGCgCCCgaGGcGg -3'
miRNA:   3'- cCCCG--------GGGCCCGG-----CCCCG-GGGaaCC-C- -5'
5727 5' -69.9 NC_001806.1 + 144821 0.68 0.246583
Target:  5'- aGGGGCCCCcgaccgcgGcGGUCcGGGCCCCguccGGa -3'
miRNA:   3'- -CCCCGGGG--------C-CCGGcCCCGGGGaa--CCc -5'
5727 5' -69.9 NC_001806.1 + 77112 0.68 0.241267
Target:  5'- uGGGCgCCaagagcgccgagCGGGCCGGGGCCguggaggagcUCggGGGg -3'
miRNA:   3'- cCCCG-GG------------GCCCGGCCCCGG----------GGaaCCC- -5'
5727 5' -69.9 NC_001806.1 + 123755 0.68 0.241267
Target:  5'- cGGGGCCuCCGGGCgccccaGcGGCCCCUc--- -3'
miRNA:   3'- -CCCCGG-GGCCCGg-----CcCCGGGGAaccc -5'
5727 5' -69.9 NC_001806.1 + 131970 0.68 0.24074
Target:  5'- uGGcGGCCcuggagcgccagaCCGGGCCGGuGGCCCUg---- -3'
miRNA:   3'- -CC-CCGG-------------GGCCCGGCC-CCGGGGaaccc -5'
5727 5' -69.9 NC_001806.1 + 34363 0.69 0.236046
Target:  5'- gGGGGaCCgGGGCUGGGuaUCCCgaggUGGGu -3'
miRNA:   3'- -CCCCgGGgCCCGGCCCc-GGGGa---ACCC- -5'
5727 5' -69.9 NC_001806.1 + 27767 0.69 0.236046
Target:  5'- gGGGGacaCCGGGuuGGGcCCCCaaaucgGGGg -3'
miRNA:   3'- -CCCCgg-GGCCCggCCCcGGGGaa----CCC- -5'
5727 5' -69.9 NC_001806.1 + 81261 0.69 0.236046
Target:  5'- aGGaacuCCCCGGGCCucacGGGGUCCC--GGGc -3'
miRNA:   3'- cCCc---GGGGCCCGG----CCCCGGGGaaCCC- -5'
5727 5' -69.9 NC_001806.1 + 5944 0.69 0.236046
Target:  5'- cGGGaccGCCCCaagGGGgCGGGGCCgCC--GGGu -3'
miRNA:   3'- -CCC---CGGGG---CCCgGCCCCGG-GGaaCCC- -5'
5727 5' -69.9 NC_001806.1 + 38159 0.69 0.234498
Target:  5'- cGGGCCCCGaGGCgcgaccacacacugUGGGGCgCUgguugaggaucgUUGGGg -3'
miRNA:   3'- cCCCGGGGC-CCG--------------GCCCCGgGG------------AACCC- -5'
5727 5' -69.9 NC_001806.1 + 45394 0.69 0.23092
Target:  5'- gGGGGCCCUGGuGCCcuuuuauguaGGcauGGCCUCgaUGGGc -3'
miRNA:   3'- -CCCCGGGGCC-CGG----------CC---CCGGGGa-ACCC- -5'
5727 5' -69.9 NC_001806.1 + 37585 0.69 0.23092
Target:  5'- aGGGCCCUccuuGGCCcgccagcaccGGGGCCCag-GGGc -3'
miRNA:   3'- cCCCGGGGc---CCGG----------CCCCGGGgaaCCC- -5'
5727 5' -69.9 NC_001806.1 + 24336 0.69 0.23092
Target:  5'- -uGGCCUCGGGCCGcguguucGGCCCg--GGGg -3'
miRNA:   3'- ccCCGGGGCCCGGCc------CCGGGgaaCCC- -5'
5727 5' -69.9 NC_001806.1 + 132511 0.69 0.23092
Target:  5'- cGGGGCCCUGGcccccgucuuuGCCuuucuGGGGCCCgagUUUGaGGu -3'
miRNA:   3'- -CCCCGGGGCC-----------CGG-----CCCCGGG---GAAC-CC- -5'
5727 5' -69.9 NC_001806.1 + 144602 0.69 0.23092
Target:  5'- cGGGCCCCccugcaGCCGGGGCggCCaaGGGg -3'
miRNA:   3'- cCCCGGGGcc----CGGCCCCGg-GGaaCCC- -5'
5727 5' -69.9 NC_001806.1 + 125954 0.69 0.229906
Target:  5'- cGGGGCCucacgaCCGcauccacccuccGCUGGGGCCCCcaGGGu -3'
miRNA:   3'- -CCCCGG------GGCc-----------CGGCCCCGGGGaaCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.