miRNA display CGI


Results 81 - 100 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5727 5' -69.9 NC_001806.1 + 71079 0.69 0.225889
Target:  5'- aGGGGCCUgGGgggacuacaGCCucGGCCCCcUGGGc -3'
miRNA:   3'- -CCCCGGGgCC---------CGGccCCGGGGaACCC- -5'
5727 5' -69.9 NC_001806.1 + 96394 0.69 0.22095
Target:  5'- gGGGGCgCCGGugguucGUCGuauGGGCgCUCUUGGGg -3'
miRNA:   3'- -CCCCGgGGCC------CGGC---CCCG-GGGAACCC- -5'
5727 5' -69.9 NC_001806.1 + 28288 0.69 0.22095
Target:  5'- gGGGGaCCCCcacucauacacgGGaGCCGGGcGCCaUgUUGGGg -3'
miRNA:   3'- -CCCC-GGGG------------CC-CGGCCC-CGG-GgAACCC- -5'
5727 5' -69.9 NC_001806.1 + 65678 0.69 0.216585
Target:  5'- uGGGGCCgCCGGccuccugucccccaaCCGGGGCCCgCgcuucgacGGGa -3'
miRNA:   3'- -CCCCGG-GGCCc--------------GGCCCCGGG-Gaa------CCC- -5'
5727 5' -69.9 NC_001806.1 + 37787 0.69 0.216105
Target:  5'- cGGGG-CCgGGGCgCGGGGgUCCgcGGGc -3'
miRNA:   3'- -CCCCgGGgCCCG-GCCCCgGGGaaCCC- -5'
5727 5' -69.9 NC_001806.1 + 23108 0.69 0.216105
Target:  5'- cGGGGCCCUGGGCCccGcGCUgCCgcGGGa -3'
miRNA:   3'- -CCCCGGGGCCCGGccC-CGG-GGaaCCC- -5'
5727 5' -69.9 NC_001806.1 + 120864 0.69 0.216105
Target:  5'- cGGcGGCCCCuGGcGCCGccuGGUCCCccGGGg -3'
miRNA:   3'- -CC-CCGGGG-CC-CGGCc--CCGGGGaaCCC- -5'
5727 5' -69.9 NC_001806.1 + 147207 0.69 0.215625
Target:  5'- -cGGCCCCGGcGgCGGaagaggcGGCCCCcgcgGGGg -3'
miRNA:   3'- ccCCGGGGCC-CgGCC-------CCGGGGaa--CCC- -5'
5727 5' -69.9 NC_001806.1 + 4061 0.69 0.21135
Target:  5'- cGGGcGCCCacaCGGccGCCGGGGCgCCCgaGGc -3'
miRNA:   3'- -CCC-CGGG---GCC--CGGCCCCG-GGGaaCCc -5'
5727 5' -69.9 NC_001806.1 + 54496 0.69 0.206686
Target:  5'- uGGGGuCCCUGGGUgGGGGCUggugacugCCgUGGu -3'
miRNA:   3'- -CCCC-GGGGCCCGgCCCCGG--------GGaACCc -5'
5727 5' -69.9 NC_001806.1 + 150886 0.69 0.206686
Target:  5'- aGGGCCCgggcaCGGGCCucGGGCCCCa---- -3'
miRNA:   3'- cCCCGGG-----GCCCGGc-CCCGGGGaaccc -5'
5727 5' -69.9 NC_001806.1 + 38812 0.7 0.20211
Target:  5'- cGGGGaCCCGGGCgGGGGUggauaCgCUggcUGGGu -3'
miRNA:   3'- -CCCCgGGGCCCGgCCCCG-----GgGA---ACCC- -5'
5727 5' -69.9 NC_001806.1 + 120106 0.7 0.197624
Target:  5'- cGGGCCCUGGGCCaggccauccGGGCCgCgCUUcaGGGc -3'
miRNA:   3'- cCCCGGGGCCCGGc--------CCCGG-G-GAA--CCC- -5'
5727 5' -69.9 NC_001806.1 + 59628 0.7 0.18891
Target:  5'- uGGGGCCCC-GGCCGGGuacuucaCCCCcauugccgUGGa -3'
miRNA:   3'- -CCCCGGGGcCCGGCCCc------GGGGa-------ACCc -5'
5727 5' -69.9 NC_001806.1 + 72539 0.7 0.188484
Target:  5'- uGGGCCCCcgggaggGGGUagGGGGCCCg--GGGc -3'
miRNA:   3'- cCCCGGGG-------CCCGg-CCCCGGGgaaCCC- -5'
5727 5' -69.9 NC_001806.1 + 28505 0.7 0.186363
Target:  5'- -uGGCCCCuuugacucagacgcaGGGcCCGGGGUCgCCgUGGGa -3'
miRNA:   3'- ccCCGGGG---------------CCC-GGCCCCGG-GGaACCC- -5'
5727 5' -69.9 NC_001806.1 + 147665 0.7 0.180537
Target:  5'- cGGGcggccggcuccGCCCCggGGGCCGGGGCgCg--GGGg -3'
miRNA:   3'- -CCC-----------CGGGG--CCCGGCCCCGgGgaaCCC- -5'
5727 5' -69.9 NC_001806.1 + 55257 0.7 0.179309
Target:  5'- -cGGCgCCCGGGCCGGc-CCCCUccgcccagagcacgUGGGg -3'
miRNA:   3'- ccCCG-GGGCCCGGCCccGGGGA--------------ACCC- -5'
5727 5' -69.9 NC_001806.1 + 56694 0.7 0.176474
Target:  5'- cGGGGgcccgggaaCCCCGGGUCGcucuGGGUCCUccGGGg -3'
miRNA:   3'- -CCCC---------GGGGCCCGGC----CCCGGGGaaCCC- -5'
5727 5' -69.9 NC_001806.1 + 73987 0.7 0.176474
Target:  5'- --cGCCCC-GGCCGGggcGGCCCCgcagGGGg -3'
miRNA:   3'- cccCGGGGcCCGGCC---CCGGGGaa--CCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.