miRNA display CGI


Results 41 - 60 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5727 5' -69.9 NC_001806.1 + 25572 0.72 0.133748
Target:  5'- uGGGGCCggggaGGGCUGGGGCCg---GGGa -3'
miRNA:   3'- -CCCCGGgg---CCCGGCCCCGGggaaCCC- -5'
5727 5' -69.9 NC_001806.1 + 25604 0.72 0.133748
Target:  5'- uGGGGCCggggaGGGCUGGGGCCg---GGGa -3'
miRNA:   3'- -CCCCGGgg---CCCGGCCCCGGggaaCCC- -5'
5727 5' -69.9 NC_001806.1 + 25636 0.67 0.311591
Target:  5'- uGGGGCUggggaGGGCUGGGGCUg---GGGa -3'
miRNA:   3'- -CCCCGGgg---CCCGGCCCCGGggaaCCC- -5'
5727 5' -69.9 NC_001806.1 + 25941 0.68 0.251997
Target:  5'- cGGGCgUgGGGgCGGGGCCgCgggagcgGGGg -3'
miRNA:   3'- cCCCGgGgCCCgGCCCCGGgGaa-----CCC- -5'
5727 5' -69.9 NC_001806.1 + 27767 0.69 0.236046
Target:  5'- gGGGGacaCCGGGuuGGGcCCCCaaaucgGGGg -3'
miRNA:   3'- -CCCCgg-GGCCCggCCCcGGGGaa----CCC- -5'
5727 5' -69.9 NC_001806.1 + 27829 0.74 0.102917
Target:  5'- gGGGGCgCCGGGUugguccccggggaCGGGGCCgCCccgcggUGGGc -3'
miRNA:   3'- -CCCCGgGGCCCG-------------GCCCCGG-GGa-----ACCC- -5'
5727 5' -69.9 NC_001806.1 + 28161 0.68 0.250362
Target:  5'- aGGGccGCCCCcagcgcgaggugagGGGCCGGGcGCCaugucUGGGg -3'
miRNA:   3'- -CCC--CGGGG--------------CCCGGCCC-CGGgga--ACCC- -5'
5727 5' -69.9 NC_001806.1 + 28288 0.69 0.22095
Target:  5'- gGGGGaCCCCcacucauacacgGGaGCCGGGcGCCaUgUUGGGg -3'
miRNA:   3'- -CCCC-GGGG------------CC-CGGCCC-CGG-GgAACCC- -5'
5727 5' -69.9 NC_001806.1 + 28396 0.66 0.364379
Target:  5'- gGGGGUgcggaacccccugaCCCuauauauacaGGGaCCGGGGUcgCCCUguUGGGg -3'
miRNA:   3'- -CCCCG--------------GGG----------CCC-GGCCCCG--GGGA--ACCC- -5'
5727 5' -69.9 NC_001806.1 + 28505 0.7 0.186363
Target:  5'- -uGGCCCCuuugacucagacgcaGGGcCCGGGGUCgCCgUGGGa -3'
miRNA:   3'- ccCCGGGG---------------CCC-GGCCCCGG-GGaACCC- -5'
5727 5' -69.9 NC_001806.1 + 30035 0.66 0.352209
Target:  5'- cGGGGCggCCgagGGGCCGgacGGGCcCCCUUGu- -3'
miRNA:   3'- -CCCCG--GGg--CCCGGC---CCCG-GGGAACcc -5'
5727 5' -69.9 NC_001806.1 + 31098 0.66 0.359332
Target:  5'- -cGGCUgCGGGCCGcGGuCCCCggcUGGa -3'
miRNA:   3'- ccCCGGgGCCCGGCcCC-GGGGa--ACCc -5'
5727 5' -69.9 NC_001806.1 + 32954 1.09 0.000208
Target:  5'- uGGGGCCCCGGGCCGGGGCCCCUUGGGu -3'
miRNA:   3'- -CCCCGGGGCCCGGCCCCGGGGAACCC- -5'
5727 5' -69.9 NC_001806.1 + 32986 0.86 0.011544
Target:  5'- cGGGGCCCCGGGCC-GGGCCgCCacgGGGg -3'
miRNA:   3'- -CCCCGGGGCCCGGcCCCGG-GGaa-CCC- -5'
5727 5' -69.9 NC_001806.1 + 33049 0.78 0.04637
Target:  5'- -aGGCCCCGGGCCGGGaacccggaaaaGCCuCCggGGGg -3'
miRNA:   3'- ccCCGGGGCCCGGCCC-----------CGG-GGaaCCC- -5'
5727 5' -69.9 NC_001806.1 + 33123 0.73 0.118646
Target:  5'- cGGGGCCcggaccgCCGcGGUCgGGGGCCCCUcgucccGGGc -3'
miRNA:   3'- -CCCCGG-------GGC-CCGG-CCCCGGGGAa-----CCC- -5'
5727 5' -69.9 NC_001806.1 + 34280 0.66 0.359332
Target:  5'- uGGGGUCCCGGGggcgggaUGGGGUUUagcggcgGGGg -3'
miRNA:   3'- -CCCCGGGGCCCg------GCCCCGGGgaa----CCC- -5'
5727 5' -69.9 NC_001806.1 + 34363 0.69 0.236046
Target:  5'- gGGGGaCCgGGGCUGGGuaUCCCgaggUGGGu -3'
miRNA:   3'- -CCCCgGGgCCCGGCCCc-GGGGa---ACCC- -5'
5727 5' -69.9 NC_001806.1 + 34412 0.72 0.143441
Target:  5'- cGGGCCgggCCGGGCCGGG-CCgggCCgggUGGGc -3'
miRNA:   3'- cCCCGG---GGCCCGGCCCcGG---GGa--ACCC- -5'
5727 5' -69.9 NC_001806.1 + 36668 0.66 0.359332
Target:  5'- gGGGGCCacgUGGGuuauguCCGGGGCCCgUaagaacagguUGGu -3'
miRNA:   3'- -CCCCGGg--GCCC------GGCCCCGGGgA----------ACCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.