Results 81 - 100 of 156 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5727 | 5' | -69.9 | NC_001806.1 | + | 59142 | 0.77 | 0.055047 |
Target: 5'- aGGGCagCCGGGCCGGGGUCUCgggUGcGGg -3' miRNA: 3'- cCCCGg-GGCCCGGCCCCGGGGa--AC-CC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 59628 | 0.7 | 0.18891 |
Target: 5'- uGGGGCCCC-GGCCGGGuacuucaCCCCcauugccgUGGa -3' miRNA: 3'- -CCCCGGGGcCCGGCCCc------GGGGa-------ACCc -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 64961 | 0.77 | 0.062189 |
Target: 5'- -cGGCgCCCGGGCCgGGGGUCCCg-GGGc -3' miRNA: 3'- ccCCG-GGGCCCGG-CCCCGGGGaaCCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 65303 | 0.67 | 0.280539 |
Target: 5'- gGGGGCCCCcaaGGGCCucGGuggggacgucGGCCgUcUGGGu -3' miRNA: 3'- -CCCCGGGG---CCCGG--CC----------CCGGgGaACCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 65450 | 0.66 | 0.366556 |
Target: 5'- cGGGGgaugccgcggcCCCCGGGUCcugGGGGCgCCCg---- -3' miRNA: 3'- -CCCC-----------GGGGCCCGG---CCCCG-GGGaaccc -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 65626 | 0.72 | 0.13884 |
Target: 5'- uGGuGGCCgUGGGCgagaGGGGCCCCggcggccucccccUGGGu -3' miRNA: 3'- -CC-CCGGgGCCCGg---CCCCGGGGa------------ACCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 65678 | 0.69 | 0.216585 |
Target: 5'- uGGGGCCgCCGGccuccugucccccaaCCGGGGCCCgCgcuucgacGGGa -3' miRNA: 3'- -CCCCGG-GGCCc--------------GGCCCCGGG-Gaa------CCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 66821 | 0.67 | 0.280539 |
Target: 5'- cGGGGCCggcCCGgguGGCCGGugugcGCCgCCUccUGGGg -3' miRNA: 3'- -CCCCGG---GGC---CCGGCCc----CGG-GGA--ACCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 67498 | 0.66 | 0.331443 |
Target: 5'- cGGGGUCCCGaccccCUGGGGagCCCU-GGGc -3' miRNA: 3'- -CCCCGGGGCcc---GGCCCCg-GGGAaCCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 68395 | 0.67 | 0.286547 |
Target: 5'- cGGGCCCaCGGGCuucCGGagacGGCgCUCUUGGc -3' miRNA: 3'- cCCCGGG-GCCCG---GCC----CCG-GGGAACCc -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 70515 | 0.67 | 0.286547 |
Target: 5'- uGGGGCCCUGGccccCCGaGGCCa--UGGGg -3' miRNA: 3'- -CCCCGGGGCCc---GGCcCCGGggaACCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 71079 | 0.69 | 0.225889 |
Target: 5'- aGGGGCCUgGGgggacuacaGCCucGGCCCCcUGGGc -3' miRNA: 3'- -CCCCGGGgCC---------CGGccCCGGGGaACCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 72539 | 0.7 | 0.188484 |
Target: 5'- uGGGCCCCcgggaggGGGUagGGGGCCCg--GGGc -3' miRNA: 3'- cCCCGGGG-------CCCGg-CCCCGGGgaaCCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 73987 | 0.7 | 0.176474 |
Target: 5'- --cGCCCC-GGCCGGggcGGCCCCgcagGGGg -3' miRNA: 3'- cccCGGGGcCCGGCC---CCGGGGaa--CCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 77112 | 0.68 | 0.241267 |
Target: 5'- uGGGCgCCaagagcgccgagCGGGCCGGGGCCguggaggagcUCggGGGg -3' miRNA: 3'- cCCCG-GG------------GCCCGGCCCCGG----------GGaaCCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 77249 | 0.68 | 0.248737 |
Target: 5'- gGGGGCCUguuggcggaauucgaCGcgguGGCCGGggaccuGGCCCCaUGGGc -3' miRNA: 3'- -CCCCGGG---------------GC----CCGGCC------CCGGGGaACCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 77504 | 0.67 | 0.311591 |
Target: 5'- cGGGGCgaggcguaCCUGcgagugagcggaGGcCCGGGGCCCCU-GGu -3' miRNA: 3'- -CCCCG--------GGGC------------CC-GGCCCCGGGGAaCCc -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 79250 | 0.68 | 0.251451 |
Target: 5'- -cGGCCCUguggaccuuguugGGGCgGaGGGCUCgUUGGGg -3' miRNA: 3'- ccCCGGGG-------------CCCGgC-CCCGGGgAACCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 79522 | 0.67 | 0.310945 |
Target: 5'- cGGGcGUCCCGGccgaaagcacgcgGCCGGcGCCCg-UGGGc -3' miRNA: 3'- -CCC-CGGGGCC-------------CGGCCcCGGGgaACCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 81261 | 0.69 | 0.236046 |
Target: 5'- aGGaacuCCCCGGGCCucacGGGGUCCC--GGGc -3' miRNA: 3'- cCCc---GGGGCCCGG----CCCCGGGGaaCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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