miRNA display CGI


Results 101 - 120 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5727 5' -69.9 NC_001806.1 + 81830 0.75 0.083163
Target:  5'- aGGGCCUgugccaCGGGCgGGaGGgCCCUUGGGu -3'
miRNA:   3'- cCCCGGG------GCCCGgCC-CCgGGGAACCC- -5'
5727 5' -69.9 NC_001806.1 + 86038 0.66 0.324724
Target:  5'- aGGGCCgCGGGgggggCGGGcucGUCCCcUGGGg -3'
miRNA:   3'- cCCCGGgGCCCg----GCCC---CGGGGaACCC- -5'
5727 5' -69.9 NC_001806.1 + 92931 0.74 0.103162
Target:  5'- cGGGCCUgGaGGCCGGGGCCCgCgcgcugaUGGa -3'
miRNA:   3'- cCCCGGGgC-CCGGCCCCGGG-Ga------ACCc -5'
5727 5' -69.9 NC_001806.1 + 93595 0.74 0.103162
Target:  5'- gGGGGCCCCGGGaCCGGcauuugccGGCCgCaaacGGGc -3'
miRNA:   3'- -CCCCGGGGCCC-GGCC--------CCGGgGaa--CCC- -5'
5727 5' -69.9 NC_001806.1 + 93889 0.66 0.345185
Target:  5'- cGGGCCCgCGGGa-GGccGCCCCgaagagGGGg -3'
miRNA:   3'- cCCCGGG-GCCCggCCc-CGGGGaa----CCC- -5'
5727 5' -69.9 NC_001806.1 + 94202 0.68 0.246583
Target:  5'- uGGaGGCCCa-GGCCGGGGCCUUUc--- -3'
miRNA:   3'- -CC-CCGGGgcCCGGCCCCGGGGAaccc -5'
5727 5' -69.9 NC_001806.1 + 95375 0.67 0.318106
Target:  5'- aGGGGCaCggGGGuuGGGaGCUCCcgGGGg -3'
miRNA:   3'- -CCCCG-GggCCCggCCC-CGGGGaaCCC- -5'
5727 5' -69.9 NC_001806.1 + 95432 0.74 0.105645
Target:  5'- cGGGCCCgggGGGCaGGGGCCCgagacgUGGGg -3'
miRNA:   3'- cCCCGGGg--CCCGgCCCCGGGga----ACCC- -5'
5727 5' -69.9 NC_001806.1 + 96394 0.69 0.22095
Target:  5'- gGGGGCgCCGGugguucGUCGuauGGGCgCUCUUGGGg -3'
miRNA:   3'- -CCCCGgGGCC------CGGC---CCCG-GGGAACCC- -5'
5727 5' -69.9 NC_001806.1 + 96516 0.66 0.367284
Target:  5'- gGGGGCCCugccacucCGGcGCCGcccGCCCCUggcgcccccccaacgGGGg -3'
miRNA:   3'- -CCCCGGG--------GCC-CGGCcc-CGGGGAa--------------CCC- -5'
5727 5' -69.9 NC_001806.1 + 98694 0.66 0.338263
Target:  5'- uGGGGCgCUGG-CCGuGGGUCUgUUGGu -3'
miRNA:   3'- -CCCCGgGGCCcGGC-CCCGGGgAACCc -5'
5727 5' -69.9 NC_001806.1 + 101298 0.67 0.318764
Target:  5'- -cGGCCCuguCGGGCaGGGGCUCCUccauccggucucccgGGGc -3'
miRNA:   3'- ccCCGGG---GCCCGgCCCCGGGGAa--------------CCC- -5'
5727 5' -69.9 NC_001806.1 + 102345 0.67 0.280539
Target:  5'- gGGGGacgucCCCCGGggccGCCGGGaGCaCCCcgUGGu -3'
miRNA:   3'- -CCCC-----GGGGCC----CGGCCC-CG-GGGa-ACCc -5'
5727 5' -69.9 NC_001806.1 + 105744 0.75 0.081184
Target:  5'- cGGGCCCCguggguuaGGGaCGGGGUCCCccaUGGGg -3'
miRNA:   3'- cCCCGGGG--------CCCgGCCCCGGGGa--ACCC- -5'
5727 5' -69.9 NC_001806.1 + 106645 0.71 0.168593
Target:  5'- cGGGCCagacgcuagaUCGGGUCGGGGaCCCCgcGGa -3'
miRNA:   3'- cCCCGG----------GGCCCGGCCCC-GGGGaaCCc -5'
5727 5' -69.9 NC_001806.1 + 106694 0.73 0.124662
Target:  5'- gGGGGCucuuCCCGGGCCcccgGGcGGCCCCcgguaucGGGu -3'
miRNA:   3'- -CCCCG----GGGCCCGG----CC-CCGGGGaa-----CCC- -5'
5727 5' -69.9 NC_001806.1 + 109233 0.67 0.298241
Target:  5'- uGGGGCCgggCGGGgCGgaauccuGGGCCCCgggcaccaGGGa -3'
miRNA:   3'- -CCCCGGg--GCCCgGC-------CCCGGGGaa------CCC- -5'
5727 5' -69.9 NC_001806.1 + 111197 0.8 0.032595
Target:  5'- cGGGCCCUGgggauagccugcgcGGCCGGGGCCUCgaugUGGGu -3'
miRNA:   3'- cCCCGGGGC--------------CCGGCCCCGGGGa---ACCC- -5'
5727 5' -69.9 NC_001806.1 + 113158 0.66 0.352209
Target:  5'- -uGGCCCaCGGGC--GGGUCCgaUGGGu -3'
miRNA:   3'- ccCCGGG-GCCCGgcCCCGGGgaACCC- -5'
5727 5' -69.9 NC_001806.1 + 113383 0.67 0.305178
Target:  5'- cGGcGGCguUCCGGGacgcCCGGGGCCUggagcUGGGg -3'
miRNA:   3'- -CC-CCG--GGGCCC----GGCCCCGGGga---ACCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.