miRNA display CGI


Results 21 - 40 of 156 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5727 5' -69.9 NC_001806.1 + 133004 0.8 0.034502
Target:  5'- --aGCCCUGGGCCGGGGCCgUCUUGGa -3'
miRNA:   3'- cccCGGGGCCCGGCCCCGG-GGAACCc -5'
5727 5' -69.9 NC_001806.1 + 132688 0.67 0.298866
Target:  5'- gGGGGCcuggCCCGcGGUgGGGGCCa---GGGu -3'
miRNA:   3'- -CCCCG----GGGC-CCGgCCCCGGggaaCCC- -5'
5727 5' -69.9 NC_001806.1 + 132511 0.69 0.23092
Target:  5'- cGGGGCCCUGGcccccgucuuuGCCuuucuGGGGCCCgagUUUGaGGu -3'
miRNA:   3'- -CCCCGGGGCC-----------CGG-----CCCCGGG---GAAC-CC- -5'
5727 5' -69.9 NC_001806.1 + 131970 0.68 0.24074
Target:  5'- uGGcGGCCcuggagcgccagaCCGGGCCGGuGGCCCUg---- -3'
miRNA:   3'- -CC-CCGG-------------GGCCCGGCC-CCGGGGaaccc -5'
5727 5' -69.9 NC_001806.1 + 128886 0.73 0.117254
Target:  5'- gGGGGCgcggagucgggagauCCUcuggGGGCCGGGcGUCCCaUUGGGg -3'
miRNA:   3'- -CCCCG---------------GGG----CCCGGCCC-CGGGG-AACCC- -5'
5727 5' -69.9 NC_001806.1 + 127536 0.66 0.33212
Target:  5'- cGGGGUCCucggCGGGCuCGGGGucguacCCCCcaacggugucauagaUGGGa -3'
miRNA:   3'- -CCCCGGG----GCCCG-GCCCC------GGGGa--------------ACCC- -5'
5727 5' -69.9 NC_001806.1 + 126854 0.66 0.366556
Target:  5'- aGGGcguaacguuccGCCUggaggaCGGcGCCGGGGCUCUcgGGGc -3'
miRNA:   3'- -CCC-----------CGGG------GCC-CGGCCCCGGGGaaCCC- -5'
5727 5' -69.9 NC_001806.1 + 125954 0.69 0.229906
Target:  5'- cGGGGCCucacgaCCGcauccacccuccGCUGGGGCCCCcaGGGu -3'
miRNA:   3'- -CCCCGG------GGCc-----------CGGCCCCGGGGaaCCC- -5'
5727 5' -69.9 NC_001806.1 + 125848 0.72 0.14818
Target:  5'- cGGGCCCCcGGCCgccgcGGacgccguggcgccccGGCCCCUcaUGGGg -3'
miRNA:   3'- cCCCGGGGcCCGG-----CC---------------CCGGGGA--ACCC- -5'
5727 5' -69.9 NC_001806.1 + 123755 0.68 0.241267
Target:  5'- cGGGGCCuCCGGGCgccccaGcGGCCCCUc--- -3'
miRNA:   3'- -CCCCGG-GGCCCGg-----CcCCGGGGAaccc -5'
5727 5' -69.9 NC_001806.1 + 122034 0.76 0.06529
Target:  5'- uGGGU--CGGGucgacCCGGGGCCCCUUGGGa -3'
miRNA:   3'- cCCCGggGCCC-----GGCCCCGGGGAACCC- -5'
5727 5' -69.9 NC_001806.1 + 121411 0.67 0.311591
Target:  5'- cGGGcgcgugcugcGCCuuGGGCCcgGGGGCCUggUGGc -3'
miRNA:   3'- -CCC----------CGGggCCCGG--CCCCGGGgaACCc -5'
5727 5' -69.9 NC_001806.1 + 120864 0.69 0.216105
Target:  5'- cGGcGGCCCCuGGcGCCGccuGGUCCCccGGGg -3'
miRNA:   3'- -CC-CCGGGG-CC-CGGCc--CCGGGGaaCCC- -5'
5727 5' -69.9 NC_001806.1 + 120106 0.7 0.197624
Target:  5'- cGGGCCCUGGGCCaggccauccGGGCCgCgCUUcaGGGc -3'
miRNA:   3'- cCCCGGGGCCCGGc--------CCCGG-G-GAA--CCC- -5'
5727 5' -69.9 NC_001806.1 + 119601 0.68 0.263117
Target:  5'- uGGaGCCCCccGGCgGGGGCCgCUUUGuGGc -3'
miRNA:   3'- cCC-CGGGGc-CCGgCCCCGG-GGAAC-CC- -5'
5727 5' -69.9 NC_001806.1 + 119526 0.71 0.170144
Target:  5'- aGGGcGCCCUGGuucaccaggccgucaGCgGGGGCgCCaUGGGg -3'
miRNA:   3'- -CCC-CGGGGCC---------------CGgCCCCGgGGaACCC- -5'
5727 5' -69.9 NC_001806.1 + 113383 0.67 0.305178
Target:  5'- cGGcGGCguUCCGGGacgcCCGGGGCCUggagcUGGGg -3'
miRNA:   3'- -CC-CCG--GGGCCC----GGCCCCGGGga---ACCC- -5'
5727 5' -69.9 NC_001806.1 + 113158 0.66 0.352209
Target:  5'- -uGGCCCaCGGGC--GGGUCCgaUGGGu -3'
miRNA:   3'- ccCCGGG-GCCCGgcCCCGGGgaACCC- -5'
5727 5' -69.9 NC_001806.1 + 111197 0.8 0.032595
Target:  5'- cGGGCCCUGgggauagccugcgcGGCCGGGGCCUCgaugUGGGu -3'
miRNA:   3'- cCCCGGGGC--------------CCGGCCCCGGGGa---ACCC- -5'
5727 5' -69.9 NC_001806.1 + 109233 0.67 0.298241
Target:  5'- uGGGGCCgggCGGGgCGgaauccuGGGCCCCgggcaccaGGGa -3'
miRNA:   3'- -CCCCGGg--GCCCgGC-------CCCGGGGaa------CCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.