miRNA display CGI


Results 61 - 80 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5727 5' -69.9 NC_001806.1 + 77249 0.68 0.248737
Target:  5'- gGGGGCCUguuggcggaauucgaCGcgguGGCCGGggaccuGGCCCCaUGGGc -3'
miRNA:   3'- -CCCCGGG---------------GC----CCGGCC------CCGGGGaACCC- -5'
5727 5' -69.9 NC_001806.1 + 77112 0.68 0.241267
Target:  5'- uGGGCgCCaagagcgccgagCGGGCCGGGGCCguggaggagcUCggGGGg -3'
miRNA:   3'- cCCCG-GG------------GCCCGGCCCCGG----------GGaaCCC- -5'
5727 5' -69.9 NC_001806.1 + 73987 0.7 0.176474
Target:  5'- --cGCCCC-GGCCGGggcGGCCCCgcagGGGg -3'
miRNA:   3'- cccCGGGGcCCGGCC---CCGGGGaa--CCC- -5'
5727 5' -69.9 NC_001806.1 + 72539 0.7 0.188484
Target:  5'- uGGGCCCCcgggaggGGGUagGGGGCCCg--GGGc -3'
miRNA:   3'- cCCCGGGG-------CCCGg-CCCCGGGgaaCCC- -5'
5727 5' -69.9 NC_001806.1 + 71079 0.69 0.225889
Target:  5'- aGGGGCCUgGGgggacuacaGCCucGGCCCCcUGGGc -3'
miRNA:   3'- -CCCCGGGgCC---------CGGccCCGGGGaACCC- -5'
5727 5' -69.9 NC_001806.1 + 70515 0.67 0.286547
Target:  5'- uGGGGCCCUGGccccCCGaGGCCa--UGGGg -3'
miRNA:   3'- -CCCCGGGGCCc---GGCcCCGGggaACCC- -5'
5727 5' -69.9 NC_001806.1 + 68395 0.67 0.286547
Target:  5'- cGGGCCCaCGGGCuucCGGagacGGCgCUCUUGGc -3'
miRNA:   3'- cCCCGGG-GCCCG---GCC----CCG-GGGAACCc -5'
5727 5' -69.9 NC_001806.1 + 67498 0.66 0.331443
Target:  5'- cGGGGUCCCGaccccCUGGGGagCCCU-GGGc -3'
miRNA:   3'- -CCCCGGGGCcc---GGCCCCg-GGGAaCCC- -5'
5727 5' -69.9 NC_001806.1 + 66821 0.67 0.280539
Target:  5'- cGGGGCCggcCCGgguGGCCGGugugcGCCgCCUccUGGGg -3'
miRNA:   3'- -CCCCGG---GGC---CCGGCCc----CGG-GGA--ACCC- -5'
5727 5' -69.9 NC_001806.1 + 65678 0.69 0.216585
Target:  5'- uGGGGCCgCCGGccuccugucccccaaCCGGGGCCCgCgcuucgacGGGa -3'
miRNA:   3'- -CCCCGG-GGCCc--------------GGCCCCGGG-Gaa------CCC- -5'
5727 5' -69.9 NC_001806.1 + 65626 0.72 0.13884
Target:  5'- uGGuGGCCgUGGGCgagaGGGGCCCCggcggccucccccUGGGu -3'
miRNA:   3'- -CC-CCGGgGCCCGg---CCCCGGGGa------------ACCC- -5'
5727 5' -69.9 NC_001806.1 + 65450 0.66 0.366556
Target:  5'- cGGGGgaugccgcggcCCCCGGGUCcugGGGGCgCCCg---- -3'
miRNA:   3'- -CCCC-----------GGGGCCCGG---CCCCG-GGGaaccc -5'
5727 5' -69.9 NC_001806.1 + 65303 0.67 0.280539
Target:  5'- gGGGGCCCCcaaGGGCCucGGuggggacgucGGCCgUcUGGGu -3'
miRNA:   3'- -CCCCGGGG---CCCGG--CC----------CCGGgGaACCC- -5'
5727 5' -69.9 NC_001806.1 + 64961 0.77 0.062189
Target:  5'- -cGGCgCCCGGGCCgGGGGUCCCg-GGGc -3'
miRNA:   3'- ccCCG-GGGCCCGG-CCCCGGGGaaCCC- -5'
5727 5' -69.9 NC_001806.1 + 59628 0.7 0.18891
Target:  5'- uGGGGCCCC-GGCCGGGuacuucaCCCCcauugccgUGGa -3'
miRNA:   3'- -CCCCGGGGcCCGGCCCc------GGGGa-------ACCc -5'
5727 5' -69.9 NC_001806.1 + 59142 0.77 0.055047
Target:  5'- aGGGCagCCGGGCCGGGGUCUCgggUGcGGg -3'
miRNA:   3'- cCCCGg-GGCCCGGCCCCGGGGa--AC-CC- -5'
5727 5' -69.9 NC_001806.1 + 57655 0.67 0.284132
Target:  5'- gGGGGCCCCcccGGaaggcggagaaggcGCCGGGGCUugcuucuCCggucGGGa -3'
miRNA:   3'- -CCCCGGGG---CC--------------CGGCCCCGG-------GGaa--CCC- -5'
5727 5' -69.9 NC_001806.1 + 57041 0.85 0.014098
Target:  5'- cGGGCCCgGGGCCGGGGCCCCc-GGc -3'
miRNA:   3'- cCCCGGGgCCCGGCCCCGGGGaaCCc -5'
5727 5' -69.9 NC_001806.1 + 56694 0.7 0.176474
Target:  5'- cGGGGgcccgggaaCCCCGGGUCGcucuGGGUCCUccGGGg -3'
miRNA:   3'- -CCCC---------GGGGCCCGGC----CCCGGGGaaCCC- -5'
5727 5' -69.9 NC_001806.1 + 56621 0.66 0.344488
Target:  5'- cGGGCCgcgcgacccuggCCGGugcgaccucaucgGCCGGcGGCCCg-UGGGa -3'
miRNA:   3'- cCCCGG------------GGCC-------------CGGCC-CCGGGgaACCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.