miRNA display CGI


Results 81 - 100 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5727 5' -69.9 NC_001806.1 + 56509 0.66 0.338263
Target:  5'- uGGGGCcacagcggcaggCCCGGGCCcGGcGUUCCccGGGc -3'
miRNA:   3'- -CCCCG------------GGGCCCGGcCC-CGGGGaaCCC- -5'
5727 5' -69.9 NC_001806.1 + 56263 0.67 0.292656
Target:  5'- cGGGCCCCGuccCCGGGGUCCUUc--- -3'
miRNA:   3'- cCCCGGGGCcc-GGCCCCGGGGAaccc -5'
5727 5' -69.9 NC_001806.1 + 55711 0.73 0.124369
Target:  5'- gGGGGUgaccUCCGGGCUggcggcugacccgGGGGaCCCCgaugUGGGg -3'
miRNA:   3'- -CCCCG----GGGCCCGG-------------CCCC-GGGGa---ACCC- -5'
5727 5' -69.9 NC_001806.1 + 55542 0.66 0.351502
Target:  5'- uGGGGCggCCCGacuuGGCgGGGGUgguguugUUCUUGGGu -3'
miRNA:   3'- -CCCCG--GGGC----CCGgCCCCG-------GGGAACCC- -5'
5727 5' -69.9 NC_001806.1 + 55257 0.7 0.179309
Target:  5'- -cGGCgCCCGGGCCGGc-CCCCUccgcccagagcacgUGGGg -3'
miRNA:   3'- ccCCG-GGGCCCGGCCccGGGGA--------------ACCC- -5'
5727 5' -69.9 NC_001806.1 + 54496 0.69 0.206686
Target:  5'- uGGGGuCCCUGGGUgGGGGCUggugacugCCgUGGu -3'
miRNA:   3'- -CCCC-GGGGCCCGgCCCCGG--------GGaACCc -5'
5727 5' -69.9 NC_001806.1 + 51392 0.73 0.121763
Target:  5'- aGGGGCUCCuuagcgcGGCCGuGGGCgCCUUGcGGc -3'
miRNA:   3'- -CCCCGGGGc------CCGGC-CCCGgGGAAC-CC- -5'
5727 5' -69.9 NC_001806.1 + 46091 0.67 0.285942
Target:  5'- cGGGGCgguuuugUCCGGcCCGGGGCCUgCgcGGGc -3'
miRNA:   3'- -CCCCG-------GGGCCcGGCCCCGGG-GaaCCC- -5'
5727 5' -69.9 NC_001806.1 + 45394 0.69 0.23092
Target:  5'- gGGGGCCCUGGuGCCcuuuuauguaGGcauGGCCUCgaUGGGc -3'
miRNA:   3'- -CCCCGGGGCC-CGG----------CC---CCGGGGa-ACCC- -5'
5727 5' -69.9 NC_001806.1 + 44690 0.66 0.34102
Target:  5'- uGGGGCCCCGaGcGCCcccuccaaccaaGGaucuucgcguaucccGGCCCCgguuggagGGGg -3'
miRNA:   3'- -CCCCGGGGC-C-CGG------------CC---------------CCGGGGaa------CCC- -5'
5727 5' -69.9 NC_001806.1 + 39182 0.72 0.143441
Target:  5'- --cGCCCCGGGgCGGcGGCCUugucugcguuCUUGGGg -3'
miRNA:   3'- cccCGGGGCCCgGCC-CCGGG----------GAACCC- -5'
5727 5' -69.9 NC_001806.1 + 38812 0.7 0.20211
Target:  5'- cGGGGaCCCGGGCgGGGGUggauaCgCUggcUGGGu -3'
miRNA:   3'- -CCCCgGGGCCCGgCCCCG-----GgGA---ACCC- -5'
5727 5' -69.9 NC_001806.1 + 38159 0.69 0.234498
Target:  5'- cGGGCCCCGaGGCgcgaccacacacugUGGGGCgCUgguugaggaucgUUGGGg -3'
miRNA:   3'- cCCCGGGGC-CCG--------------GCCCCGgGG------------AACCC- -5'
5727 5' -69.9 NC_001806.1 + 37933 0.76 0.074425
Target:  5'- gGGGccguccguccaccccGCCCCGGGgCGGGGUCCCccaGGGu -3'
miRNA:   3'- -CCC---------------CGGGGCCCgGCCCCGGGGaa-CCC- -5'
5727 5' -69.9 NC_001806.1 + 37787 0.69 0.216105
Target:  5'- cGGGG-CCgGGGCgCGGGGgUCCgcGGGc -3'
miRNA:   3'- -CCCCgGGgCCCG-GCCCCgGGGaaCCC- -5'
5727 5' -69.9 NC_001806.1 + 37585 0.69 0.23092
Target:  5'- aGGGCCCUccuuGGCCcgccagcaccGGGGCCCag-GGGc -3'
miRNA:   3'- cCCCGGGGc---CCGG----------CCCCGGGgaaCCC- -5'
5727 5' -69.9 NC_001806.1 + 36668 0.66 0.359332
Target:  5'- gGGGGCCacgUGGGuuauguCCGGGGCCCgUaagaacagguUGGu -3'
miRNA:   3'- -CCCCGGg--GCCC------GGCCCCGGGgA----------ACCc -5'
5727 5' -69.9 NC_001806.1 + 34412 0.72 0.143441
Target:  5'- cGGGCCgggCCGGGCCGGG-CCgggCCgggUGGGc -3'
miRNA:   3'- cCCCGG---GGCCCGGCCCcGG---GGa--ACCC- -5'
5727 5' -69.9 NC_001806.1 + 34363 0.69 0.236046
Target:  5'- gGGGGaCCgGGGCUGGGuaUCCCgaggUGGGu -3'
miRNA:   3'- -CCCCgGGgCCCGGCCCc-GGGGa---ACCC- -5'
5727 5' -69.9 NC_001806.1 + 34280 0.66 0.359332
Target:  5'- uGGGGUCCCGGGggcgggaUGGGGUUUagcggcgGGGg -3'
miRNA:   3'- -CCCCGGGGCCCg------GCCCCGGGgaa----CCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.