miRNA display CGI


Results 81 - 100 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5727 5' -69.9 NC_001806.1 + 3351 0.72 0.143441
Target:  5'- gGGGGCUggCGGGCCGGGccccggccaGCCCC--GGGa -3'
miRNA:   3'- -CCCCGGg-GCCCGGCCC---------CGGGGaaCCC- -5'
5727 5' -69.9 NC_001806.1 + 34412 0.72 0.143441
Target:  5'- cGGGCCgggCCGGGCCGGG-CCgggCCgggUGGGc -3'
miRNA:   3'- cCCCGG---GGCCCGGCCCcGG---GGa--ACCC- -5'
5727 5' -69.9 NC_001806.1 + 39182 0.72 0.143441
Target:  5'- --cGCCCCGGGgCGGcGGCCUugucugcguuCUUGGGg -3'
miRNA:   3'- cccCGGGGCCCgGCC-CCGGG----------GAACCC- -5'
5727 5' -69.9 NC_001806.1 + 125848 0.72 0.14818
Target:  5'- cGGGCCCCcGGCCgccgcGGacgccguggcgccccGGCCCCUcaUGGGg -3'
miRNA:   3'- cCCCGGGGcCCGG-----CC---------------CCGGGGA--ACCC- -5'
5727 5' -69.9 NC_001806.1 + 2700 0.71 0.155199
Target:  5'- gGGGGCugccgccgccagccgCCCaggGGGUCGGGGCCCUcgGcGGg -3'
miRNA:   3'- -CCCCG---------------GGG---CCCGGCCCCGGGGaaC-CC- -5'
5727 5' -69.9 NC_001806.1 + 2942 0.71 0.156277
Target:  5'- gGGcGGCCgggCCGGGCCGGGacucuugcgcuugcGCCCCUcccgcggcgcgGGGa -3'
miRNA:   3'- -CC-CCGG---GGCCCGGCCC--------------CGGGGAa----------CCC- -5'
5727 5' -69.9 NC_001806.1 + 144967 0.71 0.157362
Target:  5'- uGGcGG-CCCGGcCCGGGGCCCCggcGGa -3'
miRNA:   3'- -CC-CCgGGGCCcGGCCCCGGGGaa-CCc -5'
5727 5' -69.9 NC_001806.1 + 25540 0.72 0.133748
Target:  5'- uGGGGCCggggaGGGCUGGGGCCg---GGGa -3'
miRNA:   3'- -CCCCGGgg---CCCGGCCCCGGggaaCCC- -5'
5727 5' -69.9 NC_001806.1 + 2440 0.72 0.127625
Target:  5'- gGGGGCCaaagaggCGGcccCCGGcGGCCCCgUGGGg -3'
miRNA:   3'- -CCCCGGg------GCCc--GGCC-CCGGGGaACCC- -5'
5727 5' -69.9 NC_001806.1 + 106694 0.73 0.124662
Target:  5'- gGGGGCucuuCCCGGGCCcccgGGcGGCCCCcgguaucGGGu -3'
miRNA:   3'- -CCCCG----GGGCCCGG----CC-CCGGGGaa-----CCC- -5'
5727 5' -69.9 NC_001806.1 + 151263 0.73 0.111837
Target:  5'- cGGGCCCacgccgggcgguggGGGCCGGGGCCgg--GGGg -3'
miRNA:   3'- cCCCGGGg-------------CCCGGCCCCGGggaaCCC- -5'
5727 5' -69.9 NC_001806.1 + 3124 0.73 0.116151
Target:  5'- cGGGUCCCGcGGCagcgCGGGGCCCa--GGGc -3'
miRNA:   3'- cCCCGGGGC-CCG----GCCCCGGGgaaCCC- -5'
5727 5' -69.9 NC_001806.1 + 9773 0.73 0.116151
Target:  5'- gGGGGCgCgUGGGgaGGGGCCCCgacgugcgggUGGGu -3'
miRNA:   3'- -CCCCG-GgGCCCggCCCCGGGGa---------ACCC- -5'
5727 5' -69.9 NC_001806.1 + 22175 0.73 0.116151
Target:  5'- cGGGcGCCCCGgcGGCCGuguGGGCgCCCgagcUGGGc -3'
miRNA:   3'- -CCC-CGGGGC--CCGGC---CCCG-GGGa---ACCC- -5'
5727 5' -69.9 NC_001806.1 + 128886 0.73 0.117254
Target:  5'- gGGGGCgcggagucgggagauCCUcuggGGGCCGGGcGUCCCaUUGGGg -3'
miRNA:   3'- -CCCCG---------------GGG----CCCGGCCC-CGGGG-AACCC- -5'
5727 5' -69.9 NC_001806.1 + 33123 0.73 0.118646
Target:  5'- cGGGGCCcggaccgCCGcGGUCgGGGGCCCCUcgucccGGGc -3'
miRNA:   3'- -CCCCGG-------GGC-CCGG-CCCCGGGGAa-----CCC- -5'
5727 5' -69.9 NC_001806.1 + 7399 0.73 0.118926
Target:  5'- aGGGaGCCCCGGucuccCCGGGaGCCCCggucuccccGGGa -3'
miRNA:   3'- -CCC-CGGGGCCc----GGCCC-CGGGGaa-------CCC- -5'
5727 5' -69.9 NC_001806.1 + 19102 0.73 0.118926
Target:  5'- uGGGGCCgaCgGGGUgGGGGCCCg--GGGc -3'
miRNA:   3'- -CCCCGG--GgCCCGgCCCCGGGgaaCCC- -5'
5727 5' -69.9 NC_001806.1 + 51392 0.73 0.121763
Target:  5'- aGGGGCUCCuuagcgcGGCCGuGGGCgCCUUGcGGc -3'
miRNA:   3'- -CCCCGGGGc------CCGGC-CCCGgGGAAC-CC- -5'
5727 5' -69.9 NC_001806.1 + 55711 0.73 0.124369
Target:  5'- gGGGGUgaccUCCGGGCUggcggcugacccgGGGGaCCCCgaugUGGGg -3'
miRNA:   3'- -CCCCG----GGGCCCGG-------------CCCC-GGGGa---ACCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.