Results 101 - 120 of 156 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5727 | 5' | -69.9 | NC_001806.1 | + | 106645 | 0.71 | 0.168593 |
Target: 5'- cGGGCCagacgcuagaUCGGGUCGGGGaCCCCgcGGa -3' miRNA: 3'- cCCCGG----------GGCCCGGCCCC-GGGGaaCCc -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 119526 | 0.71 | 0.170144 |
Target: 5'- aGGGcGCCCUGGuucaccaggccgucaGCgGGGGCgCCaUGGGg -3' miRNA: 3'- -CCC-CGGGGCC---------------CGgCCCCGgGGaACCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 73987 | 0.7 | 0.176474 |
Target: 5'- --cGCCCC-GGCCGGggcGGCCCCgcagGGGg -3' miRNA: 3'- cccCGGGGcCCGGCC---CCGGGGaa--CCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 56694 | 0.7 | 0.176474 |
Target: 5'- cGGGGgcccgggaaCCCCGGGUCGcucuGGGUCCUccGGGg -3' miRNA: 3'- -CCCC---------GGGGCCCGGC----CCCGGGGaaCCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 55257 | 0.7 | 0.179309 |
Target: 5'- -cGGCgCCCGGGCCGGc-CCCCUccgcccagagcacgUGGGg -3' miRNA: 3'- ccCCG-GGGCCCGGCCccGGGGA--------------ACCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 125848 | 0.72 | 0.14818 |
Target: 5'- cGGGCCCCcGGCCgccgcGGacgccguggcgccccGGCCCCUcaUGGGg -3' miRNA: 3'- cCCCGGGGcCCGG-----CC---------------CCGGGGA--ACCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 39182 | 0.72 | 0.143441 |
Target: 5'- --cGCCCCGGGgCGGcGGCCUugucugcguuCUUGGGg -3' miRNA: 3'- cccCGGGGCCCgGCC-CCGGG----------GAACCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 33123 | 0.73 | 0.118646 |
Target: 5'- cGGGGCCcggaccgCCGcGGUCgGGGGCCCCUcgucccGGGc -3' miRNA: 3'- -CCCCGG-------GGC-CCGG-CCCCGGGGAa-----CCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 7399 | 0.73 | 0.118926 |
Target: 5'- aGGGaGCCCCGGucuccCCGGGaGCCCCggucuccccGGGa -3' miRNA: 3'- -CCC-CGGGGCCc----GGCCC-CGGGGaa-------CCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 19102 | 0.73 | 0.118926 |
Target: 5'- uGGGGCCgaCgGGGUgGGGGCCCg--GGGc -3' miRNA: 3'- -CCCCGG--GgCCCGgCCCCGGGgaaCCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 51392 | 0.73 | 0.121763 |
Target: 5'- aGGGGCUCCuuagcgcGGCCGuGGGCgCCUUGcGGc -3' miRNA: 3'- -CCCCGGGGc------CCGGC-CCCGgGGAAC-CC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 55711 | 0.73 | 0.124369 |
Target: 5'- gGGGGUgaccUCCGGGCUggcggcugacccgGGGGaCCCCgaugUGGGg -3' miRNA: 3'- -CCCCG----GGGCCCGG-------------CCCC-GGGGa---ACCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 106694 | 0.73 | 0.124662 |
Target: 5'- gGGGGCucuuCCCGGGCCcccgGGcGGCCCCcgguaucGGGu -3' miRNA: 3'- -CCCCG----GGGCCCGG----CC-CCGGGGaa-----CCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 2440 | 0.72 | 0.127625 |
Target: 5'- gGGGGCCaaagaggCGGcccCCGGcGGCCCCgUGGGg -3' miRNA: 3'- -CCCCGGg------GCCc--GGCC-CCGGGGaACCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 25540 | 0.72 | 0.133748 |
Target: 5'- uGGGGCCggggaGGGCUGGGGCCg---GGGa -3' miRNA: 3'- -CCCCGGgg---CCCGGCCCCGGggaaCCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 25572 | 0.72 | 0.133748 |
Target: 5'- uGGGGCCggggaGGGCUGGGGCCg---GGGa -3' miRNA: 3'- -CCCCGGgg---CCCGGCCCCGGggaaCCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 25604 | 0.72 | 0.133748 |
Target: 5'- uGGGGCCggggaGGGCUGGGGCCg---GGGa -3' miRNA: 3'- -CCCCGGgg---CCCGGCCCCGGggaaCCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 65626 | 0.72 | 0.13884 |
Target: 5'- uGGuGGCCgUGGGCgagaGGGGCCCCggcggccucccccUGGGu -3' miRNA: 3'- -CC-CCGGgGCCCGg---CCCCGGGGa------------ACCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 3351 | 0.72 | 0.143441 |
Target: 5'- gGGGGCUggCGGGCCGGGccccggccaGCCCC--GGGa -3' miRNA: 3'- -CCCCGGg-GCCCGGCCC---------CGGGGaaCCC- -5' |
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5727 | 5' | -69.9 | NC_001806.1 | + | 34412 | 0.72 | 0.143441 |
Target: 5'- cGGGCCgggCCGGGCCGGG-CCgggCCgggUGGGc -3' miRNA: 3'- cCCCGG---GGCCCGGCCCcGG---GGa--ACCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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