miRNA display CGI


Results 41 - 60 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5727 5' -69.9 NC_001806.1 + 111197 0.8 0.032595
Target:  5'- cGGGCCCUGgggauagccugcgcGGCCGGGGCCUCgaugUGGGu -3'
miRNA:   3'- cCCCGGGGC--------------CCGGCCCCGGGGa---ACCC- -5'
5727 5' -69.9 NC_001806.1 + 4738 0.82 0.026934
Target:  5'- -cGGCCCCGGGCCGGGGCCCg----- -3'
miRNA:   3'- ccCCGGGGCCCGGCCCCGGGgaaccc -5'
5727 5' -69.9 NC_001806.1 + 144999 0.84 0.016375
Target:  5'- aGGGGCCCCGGcCCGGGGCCCCa---- -3'
miRNA:   3'- -CCCCGGGGCCcGGCCCCGGGGaaccc -5'
5727 5' -69.9 NC_001806.1 + 57041 0.85 0.014098
Target:  5'- cGGGCCCgGGGCCGGGGCCCCc-GGc -3'
miRNA:   3'- cCCCGGGgCCCGGCCCCGGGGaaCCc -5'
5727 5' -69.9 NC_001806.1 + 32986 0.86 0.011544
Target:  5'- cGGGGCCCCGGGCC-GGGCCgCCacgGGGg -3'
miRNA:   3'- -CCCCGGGGCCCGGcCCCGG-GGaa-CCC- -5'
5727 5' -69.9 NC_001806.1 + 122034 0.76 0.06529
Target:  5'- uGGGU--CGGGucgacCCGGGGCCCCUUGGGa -3'
miRNA:   3'- cCCCGggGCCC-----GGCCCCGGGGAACCC- -5'
5727 5' -69.9 NC_001806.1 + 37933 0.76 0.074425
Target:  5'- gGGGccguccguccaccccGCCCCGGGgCGGGGUCCCccaGGGu -3'
miRNA:   3'- -CCC---------------CGGGGCCCgGCCCCGGGGaa-CCC- -5'
5727 5' -69.9 NC_001806.1 + 9773 0.73 0.116151
Target:  5'- gGGGGCgCgUGGGgaGGGGCCCCgacgugcgggUGGGu -3'
miRNA:   3'- -CCCCG-GgGCCCggCCCCGGGGa---------ACCC- -5'
5727 5' -69.9 NC_001806.1 + 3124 0.73 0.116151
Target:  5'- cGGGUCCCGcGGCagcgCGGGGCCCa--GGGc -3'
miRNA:   3'- cCCCGGGGC-CCG----GCCCCGGGgaaCCC- -5'
5727 5' -69.9 NC_001806.1 + 151263 0.73 0.111837
Target:  5'- cGGGCCCacgccgggcgguggGGGCCGGGGCCgg--GGGg -3'
miRNA:   3'- cCCCGGGg-------------CCCGGCCCCGGggaaCCC- -5'
5727 5' -69.9 NC_001806.1 + 95432 0.74 0.105645
Target:  5'- cGGGCCCgggGGGCaGGGGCCCgagacgUGGGg -3'
miRNA:   3'- cCCCGGGg--CCCGgCCCCGGGga----ACCC- -5'
5727 5' -69.9 NC_001806.1 + 93595 0.74 0.103162
Target:  5'- gGGGGCCCCGGGaCCGGcauuugccGGCCgCaaacGGGc -3'
miRNA:   3'- -CCCCGGGGCCC-GGCC--------CCGGgGaa--CCC- -5'
5727 5' -69.9 NC_001806.1 + 92931 0.74 0.103162
Target:  5'- cGGGCCUgGaGGCCGGGGCCCgCgcgcugaUGGa -3'
miRNA:   3'- cCCCGGGgC-CCGGCCCCGGG-Ga------ACCc -5'
5727 5' -69.9 NC_001806.1 + 27829 0.74 0.102917
Target:  5'- gGGGGCgCCGGGUugguccccggggaCGGGGCCgCCccgcggUGGGc -3'
miRNA:   3'- -CCCCGgGGCCCG-------------GCCCCGG-GGa-----ACCC- -5'
5727 5' -69.9 NC_001806.1 + 21951 0.74 0.098359
Target:  5'- cGGGCCCUucacGGCCGGGcaGCCCCggcGGGu -3'
miRNA:   3'- cCCCGGGGc---CCGGCCC--CGGGGaa-CCC- -5'
5727 5' -69.9 NC_001806.1 + 9336 0.74 0.098359
Target:  5'- uGGGGCCUCGGGauGGGGCgCCUUa-- -3'
miRNA:   3'- -CCCCGGGGCCCggCCCCGgGGAAccc -5'
5727 5' -69.9 NC_001806.1 + 147784 0.74 0.096037
Target:  5'- gGGGGCCCgGGGCgGGGGgCggagCCUggcaUGGGc -3'
miRNA:   3'- -CCCCGGGgCCCGgCCCCgG----GGA----ACCC- -5'
5727 5' -69.9 NC_001806.1 + 81830 0.75 0.083163
Target:  5'- aGGGCCUgugccaCGGGCgGGaGGgCCCUUGGGu -3'
miRNA:   3'- cCCCGGG------GCCCGgCC-CCgGGGAACCC- -5'
5727 5' -69.9 NC_001806.1 + 105744 0.75 0.081184
Target:  5'- cGGGCCCCguggguuaGGGaCGGGGUCCCccaUGGGg -3'
miRNA:   3'- cCCCGGGG--------CCCgGCCCCGGGGa--ACCC- -5'
5727 5' -69.9 NC_001806.1 + 4426 0.75 0.079249
Target:  5'- gGGGGUggCCCGGGCgGGGGCggcguccgCCCggGGGc -3'
miRNA:   3'- -CCCCG--GGGCCCGgCCCCG--------GGGaaCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.