miRNA display CGI


Results 21 - 40 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5727 5' -69.9 NC_001806.1 + 44690 0.66 0.34102
Target:  5'- uGGGGCCCCGaGcGCCcccuccaaccaaGGaucuucgcguaucccGGCCCCgguuggagGGGg -3'
miRNA:   3'- -CCCCGGGGC-C-CGG------------CC---------------CCGGGGaa------CCC- -5'
5727 5' -69.9 NC_001806.1 + 98694 0.66 0.338263
Target:  5'- uGGGGCgCUGG-CCGuGGGUCUgUUGGu -3'
miRNA:   3'- -CCCCGgGGCCcGGC-CCCGGGgAACCc -5'
5727 5' -69.9 NC_001806.1 + 56509 0.66 0.338263
Target:  5'- uGGGGCcacagcggcaggCCCGGGCCcGGcGUUCCccGGGc -3'
miRNA:   3'- -CCCCG------------GGGCCCGGcCC-CGGGGaaCCC- -5'
5727 5' -69.9 NC_001806.1 + 127536 0.66 0.33212
Target:  5'- cGGGGUCCucggCGGGCuCGGGGucguacCCCCcaacggugucauagaUGGGa -3'
miRNA:   3'- -CCCCGGG----GCCCG-GCCCC------GGGGa--------------ACCC- -5'
5727 5' -69.9 NC_001806.1 + 67498 0.66 0.331443
Target:  5'- cGGGGUCCCGaccccCUGGGGagCCCU-GGGc -3'
miRNA:   3'- -CCCCGGGGCcc---GGCCCCg-GGGAaCCC- -5'
5727 5' -69.9 NC_001806.1 + 86038 0.66 0.324724
Target:  5'- aGGGCCgCGGGgggggCGGGcucGUCCCcUGGGg -3'
miRNA:   3'- cCCCGGgGCCCg----GCCC---CGGGGaACCC- -5'
5727 5' -69.9 NC_001806.1 + 12910 0.66 0.324724
Target:  5'- cGGGGUCCUccaagaGGGCCgaauccucGGGGUCUUccGGGg -3'
miRNA:   3'- -CCCCGGGG------CCCGG--------CCCCGGGGaaCCC- -5'
5727 5' -69.9 NC_001806.1 + 23795 0.66 0.324724
Target:  5'- cGGGGCCgCCggGGGCCGccucuuuGGCCCCcUGc- -3'
miRNA:   3'- -CCCCGG-GG--CCCGGCc------CCGGGGaACcc -5'
5727 5' -69.9 NC_001806.1 + 22578 0.66 0.324724
Target:  5'- gGGGaGCCCCGGcGCCGGcGCagaugaCgaGGGg -3'
miRNA:   3'- -CCC-CGGGGCC-CGGCCcCGgg----GaaCCC- -5'
5727 5' -69.9 NC_001806.1 + 101298 0.67 0.318764
Target:  5'- -cGGCCCuguCGGGCaGGGGCUCCUccauccggucucccgGGGc -3'
miRNA:   3'- ccCCGGG---GCCCGgCCCCGGGGAa--------------CCC- -5'
5727 5' -69.9 NC_001806.1 + 4177 0.67 0.318106
Target:  5'- --cGCCCCggGGGCgGGGGCCCggcgccGGGc -3'
miRNA:   3'- cccCGGGG--CCCGgCCCCGGGgaa---CCC- -5'
5727 5' -69.9 NC_001806.1 + 95375 0.67 0.318106
Target:  5'- aGGGGCaCggGGGuuGGGaGCUCCcgGGGg -3'
miRNA:   3'- -CCCCG-GggCCCggCCC-CGGGGaaCCC- -5'
5727 5' -69.9 NC_001806.1 + 150670 0.67 0.318106
Target:  5'- cGGGCCCCGccgcGCUGGcGGCCgCCgaUGGc -3'
miRNA:   3'- cCCCGGGGCc---CGGCC-CCGG-GGa-ACCc -5'
5727 5' -69.9 NC_001806.1 + 25636 0.67 0.311591
Target:  5'- uGGGGCUggggaGGGCUGGGGCUg---GGGa -3'
miRNA:   3'- -CCCCGGgg---CCCGGCCCCGGggaaCCC- -5'
5727 5' -69.9 NC_001806.1 + 77504 0.67 0.311591
Target:  5'- cGGGGCgaggcguaCCUGcgagugagcggaGGcCCGGGGCCCCU-GGu -3'
miRNA:   3'- -CCCCG--------GGGC------------CC-GGCCCCGGGGAaCCc -5'
5727 5' -69.9 NC_001806.1 + 121411 0.67 0.311591
Target:  5'- cGGGcgcgugcugcGCCuuGGGCCcgGGGGCCUggUGGc -3'
miRNA:   3'- -CCC----------CGGggCCCGG--CCCCGGGgaACCc -5'
5727 5' -69.9 NC_001806.1 + 151544 0.67 0.311591
Target:  5'- uGGGCCCgGgcGGCCGGGGgCggcgGGGg -3'
miRNA:   3'- cCCCGGGgC--CCGGCCCCgGggaaCCC- -5'
5727 5' -69.9 NC_001806.1 + 79522 0.67 0.310945
Target:  5'- cGGGcGUCCCGGccgaaagcacgcgGCCGGcGCCCg-UGGGc -3'
miRNA:   3'- -CCC-CGGGGCC-------------CGGCCcCGGGgaACCC- -5'
5727 5' -69.9 NC_001806.1 + 113383 0.67 0.305178
Target:  5'- cGGcGGCguUCCGGGacgcCCGGGGCCUggagcUGGGg -3'
miRNA:   3'- -CC-CCG--GGGCCC----GGCCCCGGGga---ACCC- -5'
5727 5' -69.9 NC_001806.1 + 148779 0.67 0.305178
Target:  5'- gGGGGCgccCCCGcaacuGCCGGGGUcuUCCUcgcgGGGg -3'
miRNA:   3'- -CCCCG---GGGCc----CGGCCCCG--GGGAa---CCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.