miRNA display CGI


Results 21 - 40 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5728 3' -67.7 NC_001806.1 + 144120 0.66 0.398196
Target:  5'- -cCCCCUGC-CUUCCaCCCUCC-GGCc -3'
miRNA:   3'- gaGGGGGCGuGAGGGgGGGGGGuCCG- -5'
5728 3' -67.7 NC_001806.1 + 131546 0.66 0.398196
Target:  5'- -aCCCCaaaaACcgCCCCCCCCCCGucaccGGUu -3'
miRNA:   3'- gaGGGGgcg-UGa-GGGGGGGGGGU-----CCG- -5'
5728 3' -67.7 NC_001806.1 + 150203 0.66 0.395845
Target:  5'- gUCCCCCaaagaaccccauuaGCAUgCCCCUCCCgCCgacgcaacagGGGCu -3'
miRNA:   3'- gAGGGGG--------------CGUGaGGGGGGGG-GG----------UCCG- -5'
5728 3' -67.7 NC_001806.1 + 145922 0.66 0.395845
Target:  5'- uCUCCCCCcccccCACcccuccgCCCCaCCCCCCAacacccacgucuguGGUg -3'
miRNA:   3'- -GAGGGGGc----GUGa------GGGG-GGGGGGU--------------CCG- -5'
5728 3' -67.7 NC_001806.1 + 65647 0.66 0.390394
Target:  5'- -gCCCCgGCGg--CCUCCCCCUGGGUg -3'
miRNA:   3'- gaGGGGgCGUgagGGGGGGGGGUCCG- -5'
5728 3' -67.7 NC_001806.1 + 30119 0.66 0.390394
Target:  5'- aCUCCCCCcCGg-CCUCUCCCCaCAGGn -3'
miRNA:   3'- -GAGGGGGcGUgaGGGGGGGGG-GUCCg -5'
5728 3' -67.7 NC_001806.1 + 5517 0.66 0.382692
Target:  5'- -gCCgCCG-GCcCCCCgCCCCCCcGGCg -3'
miRNA:   3'- gaGGgGGCgUGaGGGG-GGGGGGuCCG- -5'
5728 3' -67.7 NC_001806.1 + 47226 0.66 0.382692
Target:  5'- -aCCCCgGCGg-CCCCCCCgCUguacgcaacgGGGCg -3'
miRNA:   3'- gaGGGGgCGUgaGGGGGGGgGG----------UCCG- -5'
5728 3' -67.7 NC_001806.1 + 115007 0.66 0.382692
Target:  5'- -aCCUgggCCGCgggGCUCCCCCUCUCCuGGa -3'
miRNA:   3'- gaGGG---GGCG---UGAGGGGGGGGGGuCCg -5'
5728 3' -67.7 NC_001806.1 + 28806 0.66 0.382692
Target:  5'- -aCCCCUuu-CUCCCCCCUcuuCCgAGGCc -3'
miRNA:   3'- gaGGGGGcguGAGGGGGGG---GGgUCCG- -5'
5728 3' -67.7 NC_001806.1 + 81459 0.66 0.382692
Target:  5'- -aCUCCCGCACggCCCCUUgggugCCCUGGGg -3'
miRNA:   3'- gaGGGGGCGUGa-GGGGGG-----GGGGUCCg -5'
5728 3' -67.7 NC_001806.1 + 96520 0.66 0.381928
Target:  5'- --gCCCUGcCACUCCggcgccgCCCgCCCCuGGCg -3'
miRNA:   3'- gagGGGGC-GUGAGG-------GGGgGGGGuCCG- -5'
5728 3' -67.7 NC_001806.1 + 103674 0.67 0.375092
Target:  5'- aUCCUCUuaaGCAC-CCCCCCgCCCUccguggAGGUg -3'
miRNA:   3'- gAGGGGG---CGUGaGGGGGG-GGGG------UCCG- -5'
5728 3' -67.7 NC_001806.1 + 30733 0.67 0.375092
Target:  5'- -aCCCCCGCGggggccgcCUCUUCCgCCgCCgGGGCc -3'
miRNA:   3'- gaGGGGGCGU--------GAGGGGG-GG-GGgUCCG- -5'
5728 3' -67.7 NC_001806.1 + 111428 0.67 0.375092
Target:  5'- uUCUCCCgGUGCcuuUCCCCCCCgaCC-GGCa -3'
miRNA:   3'- gAGGGGG-CGUG---AGGGGGGGg-GGuCCG- -5'
5728 3' -67.7 NC_001806.1 + 150674 0.67 0.370582
Target:  5'- -cCCCgCCGCGCUggcggccgccgauggCCaguCCCgCCCCCgAGGCg -3'
miRNA:   3'- gaGGG-GGCGUGA---------------GG---GGG-GGGGG-UCCG- -5'
5728 3' -67.7 NC_001806.1 + 12604 0.67 0.370582
Target:  5'- --aCCCCGCAgaCCUgaCCCCCCCgcacccauuaaggggGGGUa -3'
miRNA:   3'- gagGGGGCGUgaGGG--GGGGGGG---------------UCCG- -5'
5728 3' -67.7 NC_001806.1 + 13959 0.67 0.367595
Target:  5'- cCUCCuCCuCGUAaauggCCCCUCCCCCuuGGGg -3'
miRNA:   3'- -GAGG-GG-GCGUga---GGGGGGGGGG--UCCg -5'
5728 3' -67.7 NC_001806.1 + 120886 0.67 0.367595
Target:  5'- gUCCCCCGgGgacCUUgCCCCggccggauUCCCGGGCc -3'
miRNA:   3'- gAGGGGGCgU---GAGgGGGG--------GGGGUCCG- -5'
5728 3' -67.7 NC_001806.1 + 67493 0.67 0.367595
Target:  5'- -cCCUCCGgGgUCCCgaCCCCCUGGGg -3'
miRNA:   3'- gaGGGGGCgUgAGGGg-GGGGGGUCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.