miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5728 5' -49.2 NC_001806.1 + 26167 0.66 0.996497
Target:  5'- gGAGCGgggGGAGgagcGGCCAGacGC-CGAAAACg -3'
miRNA:   3'- -UUCGUa--UCUC----UCGGUC--CGuGUUUUUG- -5'
5728 5' -49.2 NC_001806.1 + 109228 0.66 0.995858
Target:  5'- uAGCGU--GGGGCCGGGCgggGCGGAAu- -3'
miRNA:   3'- uUCGUAucUCUCGGUCCG---UGUUUUug -5'
5728 5' -49.2 NC_001806.1 + 22570 0.66 0.995858
Target:  5'- gGGGCcgcGGGGAGCCccggcgccGGCGCAGAuGACg -3'
miRNA:   3'- -UUCGua-UCUCUCGGu-------CCGUGUUU-UUG- -5'
5728 5' -49.2 NC_001806.1 + 147792 0.66 0.995126
Target:  5'- gGGGCGgggGGcGGAGCCuGGCAUggGcGCc -3'
miRNA:   3'- -UUCGUa--UC-UCUCGGuCCGUGuuUuUG- -5'
5728 5' -49.2 NC_001806.1 + 28301 0.66 0.995126
Target:  5'- --uCAUAcacGGGAGCCGGGCGCcauguuGGGGCg -3'
miRNA:   3'- uucGUAU---CUCUCGGUCCGUGu-----UUUUG- -5'
5728 5' -49.2 NC_001806.1 + 88793 0.66 0.994292
Target:  5'- uGGCcuuccGGAGUCAGGCcCAGGAGCg -3'
miRNA:   3'- uUCGuauc-UCUCGGUCCGuGUUUUUG- -5'
5728 5' -49.2 NC_001806.1 + 147610 0.66 0.994292
Target:  5'- -cGCGgccuGAGCCAGGgACGAGuGCg -3'
miRNA:   3'- uuCGUaucuCUCGGUCCgUGUUUuUG- -5'
5728 5' -49.2 NC_001806.1 + 61348 0.66 0.994292
Target:  5'- uGGCGUcGGGGGGUgGGGCG-GAAAACa -3'
miRNA:   3'- uUCGUA-UCUCUCGgUCCGUgUUUUUG- -5'
5728 5' -49.2 NC_001806.1 + 25637 0.66 0.994292
Target:  5'- gGGGCuggGGAGGGCUgGGGCugGGGAGg -3'
miRNA:   3'- -UUCGua-UCUCUCGG-UCCGugUUUUUg -5'
5728 5' -49.2 NC_001806.1 + 121391 0.66 0.994292
Target:  5'- -cGCGaAGAcccccccgGAGCCGGGCGCGugcuGCg -3'
miRNA:   3'- uuCGUaUCU--------CUCGGUCCGUGUuuu-UG- -5'
5728 5' -49.2 NC_001806.1 + 11518 0.66 0.994203
Target:  5'- uGGGCAUcuGGGGGCUguaaaucGGGCgACGGGAGCg -3'
miRNA:   3'- -UUCGUAu-CUCUCGG-------UCCG-UGUUUUUG- -5'
5728 5' -49.2 NC_001806.1 + 101924 0.66 0.993347
Target:  5'- uGGGCGUcaagacacAGGGcGGCCAGGCcgGGAAACa -3'
miRNA:   3'- -UUCGUA--------UCUC-UCGGUCCGugUUUUUG- -5'
5728 5' -49.2 NC_001806.1 + 21287 0.66 0.993347
Target:  5'- cGGCGggacgGGAGGGCCcccgcggcGGGCACcgacgccggcGAGGACg -3'
miRNA:   3'- uUCGUa----UCUCUCGG--------UCCGUG----------UUUUUG- -5'
5728 5' -49.2 NC_001806.1 + 66716 0.67 0.99228
Target:  5'- uGGCGguaAGuGAauaCCAGGUACAGAAACg -3'
miRNA:   3'- uUCGUa--UCuCUc--GGUCCGUGUUUUUG- -5'
5728 5' -49.2 NC_001806.1 + 45319 0.67 0.99228
Target:  5'- cGGCGaGGAGGG-CGGGCGCGAu--- -3'
miRNA:   3'- uUCGUaUCUCUCgGUCCGUGUUuuug -5'
5728 5' -49.2 NC_001806.1 + 57005 0.67 0.99228
Target:  5'- -cGCAUAGgcggcgcccAGuGCCAGGCACuggguGGCc -3'
miRNA:   3'- uuCGUAUC---------UCuCGGUCCGUGuuu--UUG- -5'
5728 5' -49.2 NC_001806.1 + 67222 0.67 0.991082
Target:  5'- gGGGCGcgcUGGuGGGCCAGGUgagGCAGGucGGCg -3'
miRNA:   3'- -UUCGU---AUCuCUCGGUCCG---UGUUU--UUG- -5'
5728 5' -49.2 NC_001806.1 + 128726 0.67 0.989742
Target:  5'- cGGCAUaAGAGcucGCCuGGCGUAAAAGCa -3'
miRNA:   3'- uUCGUA-UCUCu--CGGuCCGUGUUUUUG- -5'
5728 5' -49.2 NC_001806.1 + 128277 0.67 0.989742
Target:  5'- cAGCAcGGcgcGAGCCGGGC-CGAcGACg -3'
miRNA:   3'- uUCGUaUCu--CUCGGUCCGuGUUuUUG- -5'
5728 5' -49.2 NC_001806.1 + 3541 0.67 0.98825
Target:  5'- -cGCG-GGGGAGgCGGGCGCGGcGGACa -3'
miRNA:   3'- uuCGUaUCUCUCgGUCCGUGUU-UUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.