miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5730 3' -61 NC_001806.1 + 131909 0.66 0.751426
Target:  5'- gCCUCC-CCGCUggaGCCccuggagaacccgacUCUguggCGGGCg -3'
miRNA:   3'- -GGAGGaGGCGAaggCGG---------------AGGa---GCCCG- -5'
5730 3' -61 NC_001806.1 + 123031 0.66 0.747739
Target:  5'- gCCUCgUCCGCgcCCaccuuaaguuGCCUCuguuuCUCGaGGCg -3'
miRNA:   3'- -GGAGgAGGCGaaGG----------CGGAG-----GAGC-CCG- -5'
5730 3' -61 NC_001806.1 + 147441 0.66 0.747739
Target:  5'- uCUUCCUCggaCGCaccgCCGCCUCCugcUCGacagaGGCg -3'
miRNA:   3'- -GGAGGAG---GCGaa--GGCGGAGG---AGC-----CCG- -5'
5730 3' -61 NC_001806.1 + 102934 0.66 0.729094
Target:  5'- aCCUCCaucUCCGCgaCgGCCagacCCggGGGCg -3'
miRNA:   3'- -GGAGG---AGGCGaaGgCGGa---GGagCCCG- -5'
5730 3' -61 NC_001806.1 + 132293 0.66 0.719653
Target:  5'- aCUCUUgCGUUUCCGCCgaUCaagaaggaGGGCg -3'
miRNA:   3'- gGAGGAgGCGAAGGCGG--AGgag-----CCCG- -5'
5730 3' -61 NC_001806.1 + 19038 0.66 0.719653
Target:  5'- uCCaUCgUgCGCUgcUCCGCCUCU--GGGCc -3'
miRNA:   3'- -GG-AGgAgGCGA--AGGCGGAGGagCCCG- -5'
5730 3' -61 NC_001806.1 + 26372 0.66 0.719653
Target:  5'- gUCUCCauggcCCGCcgCCGCCgCCaUCGcGGCc -3'
miRNA:   3'- -GGAGGa----GGCGaaGGCGGaGG-AGC-CCG- -5'
5730 3' -61 NC_001806.1 + 132662 0.66 0.719653
Target:  5'- --gCCgcggCCGCUuacgCCGCgCUCCUgGGGg -3'
miRNA:   3'- ggaGGa---GGCGAa---GGCG-GAGGAgCCCg -5'
5730 3' -61 NC_001806.1 + 69905 0.66 0.719653
Target:  5'- aCC-CagaUCCGCUUCC-CCgcCCUCgaGGGCa -3'
miRNA:   3'- -GGaGg--AGGCGAAGGcGGa-GGAG--CCCG- -5'
5730 3' -61 NC_001806.1 + 81927 0.66 0.719653
Target:  5'- cCCggCCUCgGCcccguaCGCCUCC-CGGGa -3'
miRNA:   3'- -GGa-GGAGgCGaag---GCGGAGGaGCCCg -5'
5730 3' -61 NC_001806.1 + 119882 0.66 0.710144
Target:  5'- cCCgcCCUCCGCUgCUGU--CCUCGGcGCu -3'
miRNA:   3'- -GGa-GGAGGCGAaGGCGgaGGAGCC-CG- -5'
5730 3' -61 NC_001806.1 + 37862 0.66 0.709189
Target:  5'- gCC-CCgugUCCGCUg--GCCUCCgggugggUCGGGCu -3'
miRNA:   3'- -GGaGG---AGGCGAaggCGGAGG-------AGCCCG- -5'
5730 3' -61 NC_001806.1 + 83645 0.66 0.707278
Target:  5'- uUCUCCacugCUGCUUCCGUaccgacggcggggugCC-CGGGCg -3'
miRNA:   3'- -GGAGGa---GGCGAAGGCGga-------------GGaGCCCG- -5'
5730 3' -61 NC_001806.1 + 150870 0.66 0.700573
Target:  5'- gCCggCUCCGCgggCCaggGCCcgggcacgggCCUCGGGCc -3'
miRNA:   3'- -GGagGAGGCGaa-GG---CGGa---------GGAGCCCG- -5'
5730 3' -61 NC_001806.1 + 111098 0.67 0.688055
Target:  5'- gCCUUgUUCGCcgCCGCCcacgagaccuucagUCCggaCGGGCu -3'
miRNA:   3'- -GGAGgAGGCGaaGGCGG--------------AGGa--GCCCG- -5'
5730 3' -61 NC_001806.1 + 92113 0.67 0.681284
Target:  5'- gCC-CC-CUGCUUCaGCUU-CUCGGGCg -3'
miRNA:   3'- -GGaGGaGGCGAAGgCGGAgGAGCCCG- -5'
5730 3' -61 NC_001806.1 + 147058 0.67 0.681284
Target:  5'- cCCggaagUCUCCGCguggCgCGUCUUC-CGGGCa -3'
miRNA:   3'- -GGa----GGAGGCGaa--G-GCGGAGGaGCCCG- -5'
5730 3' -61 NC_001806.1 + 34154 0.67 0.681284
Target:  5'- cCCUcCCUCCGUccccUCCGUCcccCCgucgCGGGUg -3'
miRNA:   3'- -GGA-GGAGGCGa---AGGCGGa--GGa---GCCCG- -5'
5730 3' -61 NC_001806.1 + 150928 0.67 0.671579
Target:  5'- aCCgCCUCgGCcUCCGCCaCC-CGGcGCc -3'
miRNA:   3'- -GGaGGAGgCGaAGGCGGaGGaGCC-CG- -5'
5730 3' -61 NC_001806.1 + 20076 0.67 0.655994
Target:  5'- gCUCCgcagCCGCUcCCGUCguucguggccggcgCCgucugCGGGCg -3'
miRNA:   3'- gGAGGa---GGCGAaGGCGGa-------------GGa----GCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.