miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5730 5' -58.8 NC_001806.1 + 100409 0.65 0.775654
Target:  5'- gGUGCCCgaugucggaacgGGGuucauGGGGGGCAGuaccGGGGAc -3'
miRNA:   3'- -CACGGGa-----------CCCu----CCCUCUGUU----CUCCUu -5'
5730 5' -58.8 NC_001806.1 + 134588 0.66 0.770973
Target:  5'- -gGuCCCUGGGguugaacAGGGAGAaccggugcagcagaaCGAGGGGGGg -3'
miRNA:   3'- caC-GGGACCC-------UCCCUCU---------------GUUCUCCUU- -5'
5730 5' -58.8 NC_001806.1 + 95434 0.66 0.768149
Target:  5'- -gGCCCgggGGGcAGGGgcccgAGACGugGGGGGAc -3'
miRNA:   3'- caCGGGa--CCC-UCCC-----UCUGU--UCUCCUu -5'
5730 5' -58.8 NC_001806.1 + 81836 0.66 0.767206
Target:  5'- uGUGCCaC-GGGcGGGAGggcccuuggguuaACAAGGGGAGc -3'
miRNA:   3'- -CACGG-GaCCCuCCCUC-------------UGUUCUCCUU- -5'
5730 5' -58.8 NC_001806.1 + 32803 0.66 0.765315
Target:  5'- -cGCCCucgacgagUGGGAuaacgggggaggaaGGGAGGgAGGAGGGu -3'
miRNA:   3'- caCGGG--------ACCCU--------------CCCUCUgUUCUCCUu -5'
5730 5' -58.8 NC_001806.1 + 27920 0.66 0.758661
Target:  5'- -cGCCCcuuugGGGAGGGgaaAGGCGGGGGu-- -3'
miRNA:   3'- caCGGGa----CCCUCCC---UCUGUUCUCcuu -5'
5730 5' -58.8 NC_001806.1 + 42318 0.66 0.758661
Target:  5'- gGUGUCg-GGGcGGGGGGCGuGGGGAAu -3'
miRNA:   3'- -CACGGgaCCCuCCCUCUGUuCUCCUU- -5'
5730 5' -58.8 NC_001806.1 + 2829 0.66 0.757706
Target:  5'- -gGCCCcGGGggcguggAGGGGGGCGcgggcgcggGGAGGGGg -3'
miRNA:   3'- caCGGGaCCC-------UCCCUCUGU---------UCUCCUU- -5'
5730 5' -58.8 NC_001806.1 + 19519 0.66 0.72956
Target:  5'- cGUGCCCaGGGGcGGGGAUcgGAGAGcGGGa -3'
miRNA:   3'- -CACGGGaCCCUcCCUCUG--UUCUC-CUU- -5'
5730 5' -58.8 NC_001806.1 + 29524 0.67 0.709722
Target:  5'- cUGaCCCUGGGGGGGcacACGGuGAGGGc -3'
miRNA:   3'- cAC-GGGACCCUCCCuc-UGUU-CUCCUu -5'
5730 5' -58.8 NC_001806.1 + 21202 0.67 0.699701
Target:  5'- -gGCCCUcGGGuGGGgcgcggAGAC-GGAGGAGg -3'
miRNA:   3'- caCGGGA-CCCuCCC------UCUGuUCUCCUU- -5'
5730 5' -58.8 NC_001806.1 + 28726 0.67 0.699701
Target:  5'- gGUGCgUCUGGaGGGcGGGAgAAGAGGGAa -3'
miRNA:   3'- -CACG-GGACCcUCC-CUCUgUUCUCCUU- -5'
5730 5' -58.8 NC_001806.1 + 28852 0.67 0.689622
Target:  5'- uGUGaggcGGGGGGGGGAgAGGGGGAAc -3'
miRNA:   3'- -CACgggaCCCUCCCUCUgUUCUCCUU- -5'
5730 5' -58.8 NC_001806.1 + 9762 0.67 0.679495
Target:  5'- -cGCCgUGGGuuGGGGGCGcguGGGGAGg -3'
miRNA:   3'- caCGGgACCCucCCUCUGUu--CUCCUU- -5'
5730 5' -58.8 NC_001806.1 + 74708 0.68 0.656071
Target:  5'- cGUGCCCguuugcGGGAGcgcgcgcgcucccuGGAGGCAAugcucGAGGGAg -3'
miRNA:   3'- -CACGGGa-----CCCUC--------------CCUCUGUU-----CUCCUU- -5'
5730 5' -58.8 NC_001806.1 + 20321 0.68 0.648916
Target:  5'- -cGCCCgccggccaaUGGGGGGGcGGCAAGGcGGGc -3'
miRNA:   3'- caCGGG---------ACCCUCCCuCUGUUCU-CCUu -5'
5730 5' -58.8 NC_001806.1 + 130020 0.68 0.648916
Target:  5'- -aGuCCCUGGGAcGGGuGcgcacccuccGCAAGGGGGAg -3'
miRNA:   3'- caC-GGGACCCU-CCCuC----------UGUUCUCCUU- -5'
5730 5' -58.8 NC_001806.1 + 135096 0.68 0.607994
Target:  5'- -gGCgCCgaccgGGGAGGGGGGCGGGGGc-- -3'
miRNA:   3'- caCG-GGa----CCCUCCCUCUGUUCUCcuu -5'
5730 5' -58.8 NC_001806.1 + 56716 0.69 0.58761
Target:  5'- -cGCUCUGGGuccuccGGGGGGCGGcGGGAAa -3'
miRNA:   3'- caCGGGACCCu-----CCCUCUGUUcUCCUU- -5'
5730 5' -58.8 NC_001806.1 + 110717 0.69 0.574426
Target:  5'- -cGCCUUcGGGGGGGAGgagggagaacugccGCuGGAGGAAc -3'
miRNA:   3'- caCGGGA-CCCUCCCUC--------------UGuUCUCCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.