miRNA display CGI


Results 41 - 60 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5731 3' -53.3 NC_001806.1 + 23222 0.75 0.576495
Target:  5'- -gGCCAGCGCaccggaCGCCGCCGACgcgcuGGCGGCc -3'
miRNA:   3'- ugUGGUUGUG------GUGGUGGUUG-----UCGUCG- -5'
5731 3' -53.3 NC_001806.1 + 31454 0.75 0.576495
Target:  5'- gACACgGGCACCACaCACCAGCGGg--- -3'
miRNA:   3'- -UGUGgUUGUGGUG-GUGGUUGUCgucg -5'
5731 3' -53.3 NC_001806.1 + 128102 0.75 0.576495
Target:  5'- gACA-CAACACCcccucgACCACCAACAaCAGCg -3'
miRNA:   3'- -UGUgGUUGUGG------UGGUGGUUGUcGUCG- -5'
5731 3' -53.3 NC_001806.1 + 1588 0.75 0.586912
Target:  5'- cGCcCCAGCGCCACguaCACgGgccGCAGCGGCg -3'
miRNA:   3'- -UGuGGUUGUGGUG---GUGgU---UGUCGUCG- -5'
5731 3' -53.3 NC_001806.1 + 69235 0.75 0.587956
Target:  5'- uGCugCAGCucggggagcagcccuCCGCCGgcgcCCAGCAGCGGCu -3'
miRNA:   3'- -UGugGUUGu--------------GGUGGU----GGUUGUCGUCG- -5'
5731 3' -53.3 NC_001806.1 + 81022 0.74 0.597364
Target:  5'- cGCGCCuguUACCGCCuaCAACAGCAGUu -3'
miRNA:   3'- -UGUGGuu-GUGGUGGugGUUGUCGUCG- -5'
5731 3' -53.3 NC_001806.1 + 2767 0.74 0.597364
Target:  5'- gGCGCgGGCggGCCugCGCCG-CGGCGGCc -3'
miRNA:   3'- -UGUGgUUG--UGGugGUGGUuGUCGUCG- -5'
5731 3' -53.3 NC_001806.1 + 98539 0.74 0.597364
Target:  5'- cACGCCGACGCCaacGCCGCCAuguuuGCGGg -3'
miRNA:   3'- -UGUGGUUGUGG---UGGUGGUugu--CGUCg -5'
5731 3' -53.3 NC_001806.1 + 39071 0.74 0.597364
Target:  5'- aGCGCCAcgaGCACCACCccgGCCAccACGGCGa- -3'
miRNA:   3'- -UGUGGU---UGUGGUGG---UGGU--UGUCGUcg -5'
5731 3' -53.3 NC_001806.1 + 4325 0.74 0.597364
Target:  5'- -gGCCGGcCACCGCCGCgCGGgccCGGCGGCg -3'
miRNA:   3'- ugUGGUU-GUGGUGGUG-GUU---GUCGUCG- -5'
5731 3' -53.3 NC_001806.1 + 115455 0.74 0.607843
Target:  5'- -gGCCGACAUCGCCGCCAaACAucGCuGCc -3'
miRNA:   3'- ugUGGUUGUGGUGGUGGU-UGU--CGuCG- -5'
5731 3' -53.3 NC_001806.1 + 21902 0.74 0.618341
Target:  5'- cGCAUCgAGCGCCGCCggGCCcgcGCGGCGGUg -3'
miRNA:   3'- -UGUGG-UUGUGGUGG--UGGu--UGUCGUCG- -5'
5731 3' -53.3 NC_001806.1 + 3595 0.74 0.618341
Target:  5'- gGCGCCGuacccggcggGCACCGCgCGCUcgcccggugcGGCGGCGGCg -3'
miRNA:   3'- -UGUGGU----------UGUGGUG-GUGG----------UUGUCGUCG- -5'
5731 3' -53.3 NC_001806.1 + 29869 0.74 0.618341
Target:  5'- aGCGCCccccucGGCGCCcaucggGCCACaCGGCAGCAGUn -3'
miRNA:   3'- -UGUGG------UUGUGG------UGGUG-GUUGUCGUCG- -5'
5731 3' -53.3 NC_001806.1 + 51446 0.74 0.627799
Target:  5'- -aGCCGGCguuucugACCugCACCGAUcGCAGCg -3'
miRNA:   3'- ugUGGUUG-------UGGugGUGGUUGuCGUCG- -5'
5731 3' -53.3 NC_001806.1 + 129499 0.74 0.62885
Target:  5'- uCGCCAuggACGCaACCGCCAACGcGCAGUu -3'
miRNA:   3'- uGUGGU---UGUGgUGGUGGUUGU-CGUCG- -5'
5731 3' -53.3 NC_001806.1 + 94492 0.74 0.62885
Target:  5'- uCGCgCGGCGCCACCGCCGcGCuGgAGCg -3'
miRNA:   3'- uGUG-GUUGUGGUGGUGGU-UGuCgUCG- -5'
5731 3' -53.3 NC_001806.1 + 1966 0.74 0.639361
Target:  5'- cGCACgGcgcACugCACgGCgGGCAGCAGCu -3'
miRNA:   3'- -UGUGgU---UGugGUGgUGgUUGUCGUCG- -5'
5731 3' -53.3 NC_001806.1 + 56305 0.74 0.639361
Target:  5'- aGCcCCAGCACCugCGCCAACGaaauccacaCGGCa -3'
miRNA:   3'- -UGuGGUUGUGGugGUGGUUGUc--------GUCG- -5'
5731 3' -53.3 NC_001806.1 + 105010 0.74 0.639361
Target:  5'- aACGCCAGCGCC-CCGgCG--AGCGGCu -3'
miRNA:   3'- -UGUGGUUGUGGuGGUgGUugUCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.