miRNA display CGI


Results 61 - 80 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5731 3' -53.3 NC_001806.1 + 22357 0.73 0.660358
Target:  5'- aACAgCAGCuccuUCAUCACCGGCAGCguGGCg -3'
miRNA:   3'- -UGUgGUUGu---GGUGGUGGUUGUCG--UCG- -5'
5731 3' -53.3 NC_001806.1 + 22411 0.66 0.955328
Target:  5'- uACGCCAugGCgGCCGgCCGcuuCGGCuggGGCc -3'
miRNA:   3'- -UGUGGUugUGgUGGU-GGUu--GUCG---UCG- -5'
5731 3' -53.3 NC_001806.1 + 22448 0.7 0.827136
Target:  5'- cGCACgCGGCgGCCGCCgugGCCAugAGCcGCc -3'
miRNA:   3'- -UGUG-GUUG-UGGUGG---UGGUugUCGuCG- -5'
5731 3' -53.3 NC_001806.1 + 22616 0.73 0.660358
Target:  5'- cCGCCGuCGCCGCCGCCGcACcgGGCgAGCg -3'
miRNA:   3'- uGUGGUuGUGGUGGUGGU-UG--UCG-UCG- -5'
5731 3' -53.3 NC_001806.1 + 22753 0.67 0.944192
Target:  5'- cACGCCGACGCCGacgacgaCGCCGGgcgccgcgcccaggcCGGCcGCg -3'
miRNA:   3'- -UGUGGUUGUGGUg------GUGGUU---------------GUCGuCG- -5'
5731 3' -53.3 NC_001806.1 + 22890 0.67 0.942332
Target:  5'- -gGCCGGgGCCcggcCCGCCAGCcccccGCGGCc -3'
miRNA:   3'- ugUGGUUgUGGu---GGUGGUUGu----CGUCG- -5'
5731 3' -53.3 NC_001806.1 + 22959 0.69 0.882806
Target:  5'- cACGCCGACGCgCcCCGCCugcGCGcGUGGCu -3'
miRNA:   3'- -UGUGGUUGUG-GuGGUGGu--UGU-CGUCG- -5'
5731 3' -53.3 NC_001806.1 + 23035 0.76 0.52517
Target:  5'- uGCGCgGGgACCugCgcgugGCCGGCGGCAGCg -3'
miRNA:   3'- -UGUGgUUgUGGugG-----UGGUUGUCGUCG- -5'
5731 3' -53.3 NC_001806.1 + 23071 0.69 0.882806
Target:  5'- cCGCCGugGCCGCCgugcgcGCCGugAGCcuGGUc -3'
miRNA:   3'- uGUGGUugUGGUGG------UGGUugUCG--UCG- -5'
5731 3' -53.3 NC_001806.1 + 23196 0.69 0.87551
Target:  5'- -aGCCuGCGCCcCCuGCUGGCGGCGGCn -3'
miRNA:   3'- ugUGGuUGUGGuGG-UGGUUGUCGUCG- -5'
5731 3' -53.3 NC_001806.1 + 23222 0.75 0.576495
Target:  5'- -gGCCAGCGCaccggaCGCCGCCGACgcgcuGGCGGCc -3'
miRNA:   3'- ugUGGUUGUG------GUGGUGGUUG-----UCGUCG- -5'
5731 3' -53.3 NC_001806.1 + 23307 0.7 0.818374
Target:  5'- gGC-CCGGCcCgGCCGCCcggaGGCGGCGGCc -3'
miRNA:   3'- -UGuGGUUGuGgUGGUGG----UUGUCGUCG- -5'
5731 3' -53.3 NC_001806.1 + 23512 0.72 0.712265
Target:  5'- cGCGCCGGC-CCGCCGagggccCCGACccccugGGCGGCu -3'
miRNA:   3'- -UGUGGUUGuGGUGGU------GGUUG------UCGUCG- -5'
5731 3' -53.3 NC_001806.1 + 23554 0.66 0.959178
Target:  5'- gGCGgCAGCcCCcgggGCCcaGCCAcACGGCGGCg -3'
miRNA:   3'- -UGUgGUUGuGG----UGG--UGGU-UGUCGUCG- -5'
5731 3' -53.3 NC_001806.1 + 23724 0.75 0.566119
Target:  5'- uGCGCCGGgccCGCCcCCGCCGcccaggccgcguGCGGCGGCg -3'
miRNA:   3'- -UGUGGUU---GUGGuGGUGGU------------UGUCGUCG- -5'
5731 3' -53.3 NC_001806.1 + 23905 0.66 0.95493
Target:  5'- uGCugUAcuCGCCGCUGCCGGgcgaggaccuggcCGGCGGCg -3'
miRNA:   3'- -UGugGUu-GUGGUGGUGGUU-------------GUCGUCG- -5'
5731 3' -53.3 NC_001806.1 + 24162 0.73 0.649867
Target:  5'- uCGCCAGCGCCgGCgACCGGCGGCu-- -3'
miRNA:   3'- uGUGGUUGUGG-UGgUGGUUGUCGucg -5'
5731 3' -53.3 NC_001806.1 + 24197 0.69 0.874767
Target:  5'- aACACCGugcGCGCCugcgacuggcCCGCCGACGggcccgcggugucGCGGCa -3'
miRNA:   3'- -UGUGGU---UGUGGu---------GGUGGUUGU-------------CGUCG- -5'
5731 3' -53.3 NC_001806.1 + 24409 0.78 0.419527
Target:  5'- cGCGCCGccgcuGCGCCugUGCCG-CGGCGGCa -3'
miRNA:   3'- -UGUGGU-----UGUGGugGUGGUuGUCGUCG- -5'
5731 3' -53.3 NC_001806.1 + 24522 0.72 0.742624
Target:  5'- -uGCCGGCGCUggACgGCCGgGCGGCGGCc -3'
miRNA:   3'- ugUGGUUGUGG--UGgUGGU-UGUCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.