miRNA display CGI


Results 41 - 60 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5731 3' -53.3 NC_001806.1 + 131194 0.67 0.946909
Target:  5'- -gACCAcaGCGCCugCcggACCcACAgGCAGCu -3'
miRNA:   3'- ugUGGU--UGUGGugG---UGGuUGU-CGUCG- -5'
5731 3' -53.3 NC_001806.1 + 130813 0.77 0.47181
Target:  5'- aGCACCAugGCCGCgCGCCugcauugggacuCGGCGGCc -3'
miRNA:   3'- -UGUGGUugUGGUG-GUGGuu----------GUCGUCG- -5'
5731 3' -53.3 NC_001806.1 + 130652 0.71 0.791051
Target:  5'- cGCGuucCCAugGCCACC-C--GCAGCAGCg -3'
miRNA:   3'- -UGU---GGUugUGGUGGuGguUGUCGUCG- -5'
5731 3' -53.3 NC_001806.1 + 129664 0.67 0.932429
Target:  5'- uGCGCCcGC-CCggGCCGCCG--AGCGGCc -3'
miRNA:   3'- -UGUGGuUGuGG--UGGUGGUugUCGUCG- -5'
5731 3' -53.3 NC_001806.1 + 129499 0.74 0.62885
Target:  5'- uCGCCAuggACGCaACCGCCAACGcGCAGUu -3'
miRNA:   3'- uGUGGU---UGUGgUGGUGGUUGU-CGUCG- -5'
5731 3' -53.3 NC_001806.1 + 129414 0.7 0.827136
Target:  5'- -gGCCAGCuCUAuUCGCCAACGauGCAGCa -3'
miRNA:   3'- ugUGGUUGuGGU-GGUGGUUGU--CGUCG- -5'
5731 3' -53.3 NC_001806.1 + 128592 0.69 0.85146
Target:  5'- gGCGCCGACcacggcauacacgGCCACgGCCAACAacaacaCGGCc -3'
miRNA:   3'- -UGUGGUUG-------------UGGUGgUGGUUGUc-----GUCG- -5'
5731 3' -53.3 NC_001806.1 + 128521 0.69 0.889867
Target:  5'- uGCGgCAugGCCaugcggGCCGCagccaGACGGCGGCc -3'
miRNA:   3'- -UGUgGUugUGG------UGGUGg----UUGUCGUCG- -5'
5731 3' -53.3 NC_001806.1 + 128102 0.75 0.576495
Target:  5'- gACA-CAACACCcccucgACCACCAACAaCAGCg -3'
miRNA:   3'- -UGUgGUUGUGG------UGGUGGUUGUcGUCG- -5'
5731 3' -53.3 NC_001806.1 + 127500 0.67 0.946909
Target:  5'- -aACCAAaca-GCUACCAACGGCGGa -3'
miRNA:   3'- ugUGGUUguggUGGUGGUUGUCGUCg -5'
5731 3' -53.3 NC_001806.1 + 126140 0.77 0.475672
Target:  5'- gGCGgCGAgGCCGgCGCCGACAcGCGGCg -3'
miRNA:   3'- -UGUgGUUgUGGUgGUGGUUGU-CGUCG- -5'
5731 3' -53.3 NC_001806.1 + 126029 0.67 0.942332
Target:  5'- aACGCCAGC-CUGCgGCCGGauguacagucuuCGGCGGUg -3'
miRNA:   3'- -UGUGGUUGuGGUGgUGGUU------------GUCGUCG- -5'
5731 3' -53.3 NC_001806.1 + 125841 0.67 0.932429
Target:  5'- cGCGCCGcggGCccccgGCCGCCGCgGACGccGUGGCg -3'
miRNA:   3'- -UGUGGU---UG-----UGGUGGUGgUUGU--CGUCG- -5'
5731 3' -53.3 NC_001806.1 + 125469 0.7 0.827136
Target:  5'- -gAUCAGCA-CGCCACCGACAccGCAGa -3'
miRNA:   3'- ugUGGUUGUgGUGGUGGUUGU--CGUCg -5'
5731 3' -53.3 NC_001806.1 + 125006 0.67 0.932429
Target:  5'- gGCAuCCGGCGCCACCuccgcaaucCCAAgauuCGGCGcGCg -3'
miRNA:   3'- -UGU-GGUUGUGGUGGu--------GGUU----GUCGU-CG- -5'
5731 3' -53.3 NC_001806.1 + 124963 0.68 0.909602
Target:  5'- -gGCCGAgACCAaCACCcACGGCcuGGCg -3'
miRNA:   3'- ugUGGUUgUGGUgGUGGuUGUCG--UCG- -5'
5731 3' -53.3 NC_001806.1 + 124419 0.7 0.835711
Target:  5'- cGCGCCGuuguguuuuuaaACACCACCugCGGgAuCAGCc -3'
miRNA:   3'- -UGUGGU------------UGUGGUGGugGUUgUcGUCG- -5'
5731 3' -53.3 NC_001806.1 + 124233 0.66 0.955328
Target:  5'- cGCGCCGGC-CgCACC-CaCAACAuccGCGGCu -3'
miRNA:   3'- -UGUGGUUGuG-GUGGuG-GUUGU---CGUCG- -5'
5731 3' -53.3 NC_001806.1 + 123827 0.68 0.909602
Target:  5'- cCACCGAUccgGCCuCCGCgAGCGGCuucGCg -3'
miRNA:   3'- uGUGGUUG---UGGuGGUGgUUGUCGu--CG- -5'
5731 3' -53.3 NC_001806.1 + 123097 0.71 0.797557
Target:  5'- gACGCCAGCugCugaccaaacaucgcGCaCACCGgguggcgggucGCGGCGGCg -3'
miRNA:   3'- -UGUGGUUGugG--------------UG-GUGGU-----------UGUCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.