miRNA display CGI


Results 1 - 20 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5731 3' -53.3 NC_001806.1 + 147763 0.66 0.969341
Target:  5'- --cCCGACGCgGCCGCgGAC-GCGGg -3'
miRNA:   3'- uguGGUUGUGgUGGUGgUUGuCGUCg -5'
5731 3' -53.3 NC_001806.1 + 34665 0.78 0.393001
Target:  5'- cCACCAcCACCACCACCGACAccucccGC-GCa -3'
miRNA:   3'- uGUGGUuGUGGUGGUGGUUGU------CGuCG- -5'
5731 3' -53.3 NC_001806.1 + 98011 0.78 0.401721
Target:  5'- aACGCCAuCGCCucgGCCACCGugGGcCGGCg -3'
miRNA:   3'- -UGUGGUuGUGG---UGGUGGUugUC-GUCG- -5'
5731 3' -53.3 NC_001806.1 + 113102 0.78 0.410564
Target:  5'- -gGCCGGCcCCGCCGCagacauGCAGCAGCu -3'
miRNA:   3'- ugUGGUUGuGGUGGUGgu----UGUCGUCG- -5'
5731 3' -53.3 NC_001806.1 + 24409 0.78 0.419527
Target:  5'- cGCGCCGccgcuGCGCCugUGCCG-CGGCGGCa -3'
miRNA:   3'- -UGUGGU-----UGUGGugGUGGUuGUCGUCG- -5'
5731 3' -53.3 NC_001806.1 + 38616 0.78 0.428607
Target:  5'- gGCugC-ACACCACCACCGGCcgGGUGGUg -3'
miRNA:   3'- -UGugGuUGUGGUGGUGGUUG--UCGUCG- -5'
5731 3' -53.3 NC_001806.1 + 101137 0.77 0.44711
Target:  5'- -gGCCAGCACCcgccCCACCucGCAGcCAGCg -3'
miRNA:   3'- ugUGGUUGUGGu---GGUGGu-UGUC-GUCG- -5'
5731 3' -53.3 NC_001806.1 + 132454 0.77 0.44711
Target:  5'- cGCGCCGGCGCUcgucGCCcuuuuCCGGCAGUGGCa -3'
miRNA:   3'- -UGUGGUUGUGG----UGGu----GGUUGUCGUCG- -5'
5731 3' -53.3 NC_001806.1 + 77363 0.77 0.45558
Target:  5'- uACGCCAAgGCCACagGCCAgacgggcgcgggcGCGGCGGCc -3'
miRNA:   3'- -UGUGGUUgUGGUGg-UGGU-------------UGUCGUCG- -5'
5731 3' -53.3 NC_001806.1 + 144212 0.8 0.327044
Target:  5'- cCGCCGACACCGCagaGCCGGCgcgcgcacucacaAGCGGCa -3'
miRNA:   3'- uGUGGUUGUGGUGg--UGGUUG-------------UCGUCG- -5'
5731 3' -53.3 NC_001806.1 + 122845 0.8 0.320242
Target:  5'- uGCGCCGGCACCagGCUAUUaAACAGCAGCc -3'
miRNA:   3'- -UGUGGUUGUGG--UGGUGG-UUGUCGUCG- -5'
5731 3' -53.3 NC_001806.1 + 3034 0.81 0.29834
Target:  5'- uGCGCUGGcCGCCGCCGCCAGCAGgGGg -3'
miRNA:   3'- -UGUGGUU-GUGGUGGUGGUUGUCgUCg -5'
5731 3' -53.3 NC_001806.1 + 81730 0.87 0.12219
Target:  5'- cGCGCCAGCACCaACCACCcaccaAAUAGCGGCc -3'
miRNA:   3'- -UGUGGUUGUGG-UGGUGG-----UUGUCGUCG- -5'
5731 3' -53.3 NC_001806.1 + 98350 0.85 0.159225
Target:  5'- cGCGCCGACAUCACCACCGuCAGCAc- -3'
miRNA:   3'- -UGUGGUUGUGGUGGUGGUuGUCGUcg -5'
5731 3' -53.3 NC_001806.1 + 114368 0.83 0.227978
Target:  5'- gGCGCCAACACCgcguccACCACCAACAuGC-GCa -3'
miRNA:   3'- -UGUGGUUGUGG------UGGUGGUUGU-CGuCG- -5'
5731 3' -53.3 NC_001806.1 + 56834 0.82 0.245652
Target:  5'- cCGCCAACACCGCCgcgGCCAggGCGGCcGCg -3'
miRNA:   3'- uGUGGUUGUGGUGG---UGGU--UGUCGuCG- -5'
5731 3' -53.3 NC_001806.1 + 63023 0.82 0.251791
Target:  5'- aACGCaCAGCGCguugcuggucuuCAUCGCCGACAGCAGCa -3'
miRNA:   3'- -UGUG-GUUGUG------------GUGGUGGUUGUCGUCG- -5'
5731 3' -53.3 NC_001806.1 + 75169 0.81 0.270968
Target:  5'- aACGCCGGCAgCGCCGCCGucgcaACGGCAGa -3'
miRNA:   3'- -UGUGGUUGUgGUGGUGGU-----UGUCGUCg -5'
5731 3' -53.3 NC_001806.1 + 50549 0.81 0.284394
Target:  5'- cGCGCCGGCugC-UCGCCAACAGCGGg -3'
miRNA:   3'- -UGUGGUUGugGuGGUGGUUGUCGUCg -5'
5731 3' -53.3 NC_001806.1 + 75637 0.81 0.296214
Target:  5'- cGCGCCGACgaacuugaggccGCCACCGCCGACcucagagagaagauGGCGGCc -3'
miRNA:   3'- -UGUGGUUG------------UGGUGGUGGUUG--------------UCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.