miRNA display CGI


Results 21 - 40 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5731 3' -53.3 NC_001806.1 + 79993 0.66 0.962792
Target:  5'- cGCGCCAACcCCccCCAggguucCCGuaggcgggccGCAGCGGCg -3'
miRNA:   3'- -UGUGGUUGuGGu-GGU------GGU----------UGUCGUCG- -5'
5731 3' -53.3 NC_001806.1 + 71431 0.66 0.962792
Target:  5'- gACACCGucGCGCCACCcACgGACuuGCcGUu -3'
miRNA:   3'- -UGUGGU--UGUGGUGG-UGgUUGu-CGuCG- -5'
5731 3' -53.3 NC_001806.1 + 51408 0.66 0.962792
Target:  5'- -gGCCGugGgCGCCuu--GCGGCAGCg -3'
miRNA:   3'- ugUGGUugUgGUGGugguUGUCGUCG- -5'
5731 3' -53.3 NC_001806.1 + 61438 0.66 0.962792
Target:  5'- cCGCCAGCGCCGCCGggcUCAggauAUGGCuGUc -3'
miRNA:   3'- uGUGGUUGUGGUGGU---GGU----UGUCGuCG- -5'
5731 3' -53.3 NC_001806.1 + 136343 0.66 0.961732
Target:  5'- -gGCCAGCGCCAgCucaaaaaacccgggGCCGGCGcgcuccGCGGCc -3'
miRNA:   3'- ugUGGUUGUGGUgG--------------UGGUUGU------CGUCG- -5'
5731 3' -53.3 NC_001806.1 + 54081 0.66 0.959178
Target:  5'- gACGCCAACccagGCCGCgGCgGGgAGCcgAGCc -3'
miRNA:   3'- -UGUGGUUG----UGGUGgUGgUUgUCG--UCG- -5'
5731 3' -53.3 NC_001806.1 + 23554 0.66 0.959178
Target:  5'- gGCGgCAGCcCCcgggGCCcaGCCAcACGGCGGCg -3'
miRNA:   3'- -UGUgGUUGuGG----UGG--UGGU-UGUCGUCG- -5'
5731 3' -53.3 NC_001806.1 + 41778 0.66 0.959178
Target:  5'- cCGCCaAACGCC-CCAUCAuuuUGGUGGCg -3'
miRNA:   3'- uGUGG-UUGUGGuGGUGGUu--GUCGUCG- -5'
5731 3' -53.3 NC_001806.1 + 4746 0.66 0.959178
Target:  5'- -gGCCGGgGCCcggUCGCCGGCGGCgucGGCu -3'
miRNA:   3'- ugUGGUUgUGGu--GGUGGUUGUCG---UCG- -5'
5731 3' -53.3 NC_001806.1 + 139756 0.66 0.959178
Target:  5'- -gACCAGCGCacugcccgaCGCCGCgCAGguGguGCa -3'
miRNA:   3'- ugUGGUUGUG---------GUGGUG-GUUguCguCG- -5'
5731 3' -53.3 NC_001806.1 + 131688 0.66 0.959178
Target:  5'- aGCGUCAGCGCCAUUACCcuuuAC-GCGGUa -3'
miRNA:   3'- -UGUGGUUGUGGUGGUGGu---UGuCGUCG- -5'
5731 3' -53.3 NC_001806.1 + 53854 0.66 0.959178
Target:  5'- gACGCguGCgACgGCgGCCAGCuguuuGGCAGCc -3'
miRNA:   3'- -UGUGguUG-UGgUGgUGGUUG-----UCGUCG- -5'
5731 3' -53.3 NC_001806.1 + 53903 0.66 0.959178
Target:  5'- uCGCCGggGCGCUacaGCCGCCGACcGCcuGCu -3'
miRNA:   3'- uGUGGU--UGUGG---UGGUGGUUGuCGu-CG- -5'
5731 3' -53.3 NC_001806.1 + 106336 0.66 0.956897
Target:  5'- -gGCCGcgugauACACCGCCcccCCGACcgccgguuggggcccGGCGGCa -3'
miRNA:   3'- ugUGGU------UGUGGUGGu--GGUUG---------------UCGUCG- -5'
5731 3' -53.3 NC_001806.1 + 14265 0.66 0.955328
Target:  5'- gAUGgUAACGCCcCCACCcGCGGCAcGUa -3'
miRNA:   3'- -UGUgGUUGUGGuGGUGGuUGUCGU-CG- -5'
5731 3' -53.3 NC_001806.1 + 79475 0.66 0.955328
Target:  5'- uGCACCGcgGCCcCCuggGCCGGCAGUcacGGCu -3'
miRNA:   3'- -UGUGGUugUGGuGG---UGGUUGUCG---UCG- -5'
5731 3' -53.3 NC_001806.1 + 22411 0.66 0.955328
Target:  5'- uACGCCAugGCgGCCGgCCGcuuCGGCuggGGCc -3'
miRNA:   3'- -UGUGGUugUGgUGGU-GGUu--GUCG---UCG- -5'
5731 3' -53.3 NC_001806.1 + 89338 0.66 0.955328
Target:  5'- gACAgCGGgcCGCCGCCACCGgaaaACAucGCGGUu -3'
miRNA:   3'- -UGUgGUU--GUGGUGGUGGU----UGU--CGUCG- -5'
5731 3' -53.3 NC_001806.1 + 138794 0.66 0.955328
Target:  5'- -gGCCGACGCaggCGCCcCCGGCgAGCGuGCg -3'
miRNA:   3'- ugUGGUUGUG---GUGGuGGUUG-UCGU-CG- -5'
5731 3' -53.3 NC_001806.1 + 124233 0.66 0.955328
Target:  5'- cGCGCCGGC-CgCACC-CaCAACAuccGCGGCu -3'
miRNA:   3'- -UGUGGUUGuG-GUGGuG-GUUGU---CGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.