Results 21 - 40 of 119 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5731 | 5' | -63.9 | NC_001806.1 | + | 21872 | 0.66 | 0.568179 |
Target: 5'- gCGGCgaggaccCCCGCgGccucCGCGGGCCGCa- -3' miRNA: 3'- -GCCGa------GGGCGgUca--GCGCUCGGCGcc -5' |
|||||||
5731 | 5' | -63.9 | NC_001806.1 | + | 9759 | 0.66 | 0.568179 |
Target: 5'- gGGCg-CCGUgGGUUGgGGGCgCGUGGg -3' miRNA: 3'- gCCGagGGCGgUCAGCgCUCG-GCGCC- -5' |
|||||||
5731 | 5' | -63.9 | NC_001806.1 | + | 65241 | 0.66 | 0.568179 |
Target: 5'- gCGGCg-CCGUguGUCGCGAcaggaacaacaGCCGCc- -3' miRNA: 3'- -GCCGagGGCGguCAGCGCU-----------CGGCGcc -5' |
|||||||
5731 | 5' | -63.9 | NC_001806.1 | + | 41983 | 0.66 | 0.559682 |
Target: 5'- aCGGcCUCCCuGcCCAGgggcgagggcugcucCGUGcuGGCCGCGGg -3' miRNA: 3'- -GCC-GAGGG-C-GGUCa--------------GCGC--UCGGCGCC- -5' |
|||||||
5731 | 5' | -63.9 | NC_001806.1 | + | 73040 | 0.66 | 0.55874 |
Target: 5'- aGGCaaaaCCC-CC-GUCG-GGGCCGCGGu -3' miRNA: 3'- gCCGa---GGGcGGuCAGCgCUCGGCGCC- -5' |
|||||||
5731 | 5' | -63.9 | NC_001806.1 | + | 15697 | 0.66 | 0.55874 |
Target: 5'- gCGGgUCCagGCCGGUCGgGuGUacgGCGGg -3' miRNA: 3'- -GCCgAGGg-CGGUCAGCgCuCGg--CGCC- -5' |
|||||||
5731 | 5' | -63.9 | NC_001806.1 | + | 100111 | 0.66 | 0.55874 |
Target: 5'- cCGGCUgaccgCCCGCC--UgGCGGuCCGCGGc -3' miRNA: 3'- -GCCGA-----GGGCGGucAgCGCUcGGCGCC- -5' |
|||||||
5731 | 5' | -63.9 | NC_001806.1 | + | 74187 | 0.66 | 0.55874 |
Target: 5'- uGGCUUCgGCCGccGUCGUGc-CCGUGGu -3' miRNA: 3'- gCCGAGGgCGGU--CAGCGCucGGCGCC- -5' |
|||||||
5731 | 5' | -63.9 | NC_001806.1 | + | 50864 | 0.66 | 0.557799 |
Target: 5'- aCGcGCgcaccaccCCCGCCaAGUucugggcggacucCGCGcGGCCGCGGa -3' miRNA: 3'- -GC-CGa-------GGGCGG-UCA-------------GCGC-UCGGCGCC- -5' |
|||||||
5731 | 5' | -63.9 | NC_001806.1 | + | 41158 | 0.67 | 0.549346 |
Target: 5'- gGGauaUgCGUCGGgguccaCGCGGGCCGCGGg -3' miRNA: 3'- gCCga-GgGCGGUCa-----GCGCUCGGCGCC- -5' |
|||||||
5731 | 5' | -63.9 | NC_001806.1 | + | 23730 | 0.67 | 0.549346 |
Target: 5'- gGGCccgccCCCGCCgcccaGGcCGCGuGCgGCGGc -3' miRNA: 3'- gCCGa----GGGCGG-----UCaGCGCuCGgCGCC- -5' |
|||||||
5731 | 5' | -63.9 | NC_001806.1 | + | 53762 | 0.67 | 0.549346 |
Target: 5'- uGGUcaauaCCGCCGacgccGUCGaCGAGCCGCaGGc -3' miRNA: 3'- gCCGag---GGCGGU-----CAGC-GCUCGGCG-CC- -5' |
|||||||
5731 | 5' | -63.9 | NC_001806.1 | + | 50398 | 0.67 | 0.540002 |
Target: 5'- uGGCUCUCGgUGGUCGUgGGGgCGCGc -3' miRNA: 3'- gCCGAGGGCgGUCAGCG-CUCgGCGCc -5' |
|||||||
5731 | 5' | -63.9 | NC_001806.1 | + | 4737 | 0.67 | 0.540002 |
Target: 5'- gCGGC-CCCGggccggggcCCGGUCGCcGGCgGCGu -3' miRNA: 3'- -GCCGaGGGC---------GGUCAGCGcUCGgCGCc -5' |
|||||||
5731 | 5' | -63.9 | NC_001806.1 | + | 65395 | 0.67 | 0.540002 |
Target: 5'- aCGGCggUCCCGCC-GUCGCu-GCCGg-- -3' miRNA: 3'- -GCCG--AGGGCGGuCAGCGcuCGGCgcc -5' |
|||||||
5731 | 5' | -63.9 | NC_001806.1 | + | 48317 | 0.67 | 0.538139 |
Target: 5'- gCGGCUCCgCGCCuGUCcuuucuccCCGCGGg -3' miRNA: 3'- -GCCGAGG-GCGGuCAGcgcuc---GGCGCC- -5' |
|||||||
5731 | 5' | -63.9 | NC_001806.1 | + | 21138 | 0.67 | 0.530712 |
Target: 5'- cCGGCUCCCcggGCCccacCGaCGGGCCGCc- -3' miRNA: 3'- -GCCGAGGG---CGGuca-GC-GCUCGGCGcc -5' |
|||||||
5731 | 5' | -63.9 | NC_001806.1 | + | 5589 | 0.67 | 0.530712 |
Target: 5'- cCGGCa--CGCCGGgggccCGUG-GCCGCGGc -3' miRNA: 3'- -GCCGaggGCGGUCa----GCGCuCGGCGCC- -5' |
|||||||
5731 | 5' | -63.9 | NC_001806.1 | + | 19180 | 0.67 | 0.530712 |
Target: 5'- ---aUCCCGCCgaucgggagAGcUCGUGAGCCGCaGGu -3' miRNA: 3'- gccgAGGGCGG---------UC-AGCGCUCGGCG-CC- -5' |
|||||||
5731 | 5' | -63.9 | NC_001806.1 | + | 135063 | 0.67 | 0.530712 |
Target: 5'- cCGGC-CCCGCgGGgacgCGcCGGGCCGgaaauCGGc -3' miRNA: 3'- -GCCGaGGGCGgUCa---GC-GCUCGGC-----GCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home