miRNA display CGI


Results 41 - 60 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5732 3' -59.7 NC_001806.1 + 48605 0.7 0.516082
Target:  5'- uAGGGGGCGcGACCgGAccCGCaucCCCCg -3'
miRNA:   3'- cUCCCCCGCaUUGGaCUa-GCGc--GGGG- -5'
5732 3' -59.7 NC_001806.1 + 119614 0.7 0.516082
Target:  5'- -cGGGGGCcgcuuuGUGGCCcca--GCGCCCCa -3'
miRNA:   3'- cuCCCCCG------CAUUGGacuagCGCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 5662 0.7 0.516082
Target:  5'- uGGGcGGGGCGcgagGGCgggugGGUcCGCGCCCCg -3'
miRNA:   3'- -CUC-CCCCGCa---UUGga---CUA-GCGCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 143116 0.69 0.613789
Target:  5'- -uGGGGGCGUGGCUgccgGGagGgGCCgCg -3'
miRNA:   3'- cuCCCCCGCAUUGGa---CUagCgCGGgG- -5'
5732 3' -59.7 NC_001806.1 + 89057 0.69 0.613789
Target:  5'- -uGGGGGCGc-GCUUGAggugaccgUCGUGCaCCCc -3'
miRNA:   3'- cuCCCCCGCauUGGACU--------AGCGCG-GGG- -5'
5732 3' -59.7 NC_001806.1 + 25410 0.69 0.613789
Target:  5'- gGAGGGGGCGaggGGCgguggUGGUgcgcggGCGCCCCc -3'
miRNA:   3'- -CUCCCCCGCa--UUGg----ACUAg-----CGCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 20727 0.69 0.613789
Target:  5'- cGGGGGGGCGgggGGCCggcGGccucCGCuGCUCCu -3'
miRNA:   3'- -CUCCCCCGCa--UUGGa--CUa---GCG-CGGGG- -5'
5732 3' -59.7 NC_001806.1 + 31372 0.69 0.60187
Target:  5'- gGAGGGGGgGgucgGGCgCUGGguggucucuggcCGCGCCCa -3'
miRNA:   3'- -CUCCCCCgCa---UUG-GACUa-----------GCGCGGGg -5'
5732 3' -59.7 NC_001806.1 + 137593 0.69 0.593941
Target:  5'- -cGGGGGCGaggaguugcggAACgaGuuUCGCGCCCUg -3'
miRNA:   3'- cuCCCCCGCa----------UUGgaCu-AGCGCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 5598 0.69 0.593941
Target:  5'- -cGGGGGCccGUGGCCgcggcccguUGGUCGaacccccgGCCCCg -3'
miRNA:   3'- cuCCCCCG--CAUUGG---------ACUAGCg-------CGGGG- -5'
5732 3' -59.7 NC_001806.1 + 109044 0.69 0.584053
Target:  5'- gGAGGGGGCucaGGCCcaa-CGCGgCCCCg -3'
miRNA:   3'- -CUCCCCCGca-UUGGacuaGCGC-GGGG- -5'
5732 3' -59.7 NC_001806.1 + 94538 0.69 0.584053
Target:  5'- -uGGGGGCGguggggucgGGCCUuAUCGUcCCCCc -3'
miRNA:   3'- cuCCCCCGCa--------UUGGAcUAGCGcGGGG- -5'
5732 3' -59.7 NC_001806.1 + 146614 0.69 0.568303
Target:  5'- cGGGGGGCGUcccuuAuuguuuucccucgucCCgGGUCGaCGCCCCc -3'
miRNA:   3'- cUCCCCCGCAu----U---------------GGaCUAGC-GCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 5235 0.69 0.564382
Target:  5'- gGAGGGGGCGaGACCcacgGAcccCGaCGaCCCCc -3'
miRNA:   3'- -CUCCCCCGCaUUGGa---CUa--GC-GC-GGGG- -5'
5732 3' -59.7 NC_001806.1 + 33364 0.68 0.643641
Target:  5'- aGGGGGGcccggagagccGCGgcACCcgGA-CGCGCCCg -3'
miRNA:   3'- -CUCCCC-----------CGCauUGGa-CUaGCGCGGGg -5'
5732 3' -59.7 NC_001806.1 + 53907 0.68 0.633689
Target:  5'- --cGGGGCGcUAcagccgccgaccGCCUGcUCGUGCUCCa -3'
miRNA:   3'- cucCCCCGC-AU------------UGGACuAGCGCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 143620 0.68 0.623736
Target:  5'- -cGGGGGcCGUuAUCUcca-GCGCCCCg -3'
miRNA:   3'- cuCCCCC-GCAuUGGAcuagCGCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 121567 0.68 0.623736
Target:  5'- cGGGGGGCu--GCgaGuccUGCGCCCCg -3'
miRNA:   3'- cUCCCCCGcauUGgaCua-GCGCGGGG- -5'
5732 3' -59.7 NC_001806.1 + 39298 0.68 0.623736
Target:  5'- cAGGGGGU---AUgUGAUCGCacauGCCCCc -3'
miRNA:   3'- cUCCCCCGcauUGgACUAGCG----CGGGG- -5'
5732 3' -59.7 NC_001806.1 + 95958 0.68 0.643641
Target:  5'- cGGGGGGCucggGugCUGAUUGgGCCg- -3'
miRNA:   3'- cUCCCCCGca--UugGACUAGCgCGGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.