Results 41 - 60 of 97 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5732 | 3' | -59.7 | NC_001806.1 | + | 91197 | 0.74 | 0.315561 |
Target: 5'- cGucGGGGCGU-ACCUGG-CGCGCgCCg -3' miRNA: 3'- -CucCCCCGCAuUGGACUaGCGCGgGG- -5' |
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5732 | 3' | -59.7 | NC_001806.1 | + | 20565 | 0.74 | 0.315561 |
Target: 5'- gGGGcGGGGCGcgGACCcacccgcccUCGCGCCCCg -3' miRNA: 3'- -CUC-CCCCGCa-UUGGacu------AGCGCGGGG- -5' |
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5732 | 3' | -59.7 | NC_001806.1 | + | 19488 | 0.75 | 0.289072 |
Target: 5'- aGAGGGGGCGggaagggcgcuugcGCUUGcgCGUGCCCa -3' miRNA: 3'- -CUCCCCCGCau------------UGGACuaGCGCGGGg -5' |
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5732 | 3' | -59.7 | NC_001806.1 | + | 147505 | 0.79 | 0.171075 |
Target: 5'- gGAGGGGGCGgcGCCgcggGAgggccCGUGCCCa -3' miRNA: 3'- -CUCCCCCGCauUGGa---CUa----GCGCGGGg -5' |
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5732 | 3' | -59.7 | NC_001806.1 | + | 9535 | 0.8 | 0.147438 |
Target: 5'- cGGGGGGGCcagccacggGACCUGGUCGCGUucuCCCu -3' miRNA: 3'- -CUCCCCCGca-------UUGGACUAGCGCG---GGG- -5' |
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5732 | 3' | -59.7 | NC_001806.1 | + | 26836 | 0.73 | 0.391626 |
Target: 5'- gGAGGGGGCGccggAGCCccc-CGCGaCCCCc -3' miRNA: 3'- -CUCCCCCGCa---UUGGacuaGCGC-GGGG- -5' |
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5732 | 3' | -59.7 | NC_001806.1 | + | 1338 | 0.73 | 0.391626 |
Target: 5'- -cGGGGGCGUGGCCaagccCGCcuccGCCCCc -3' miRNA: 3'- cuCCCCCGCAUUGGacua-GCG----CGGGG- -5' |
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5732 | 3' | -59.7 | NC_001806.1 | + | 80336 | 0.71 | 0.490692 |
Target: 5'- -cGGGGGCauuugaccgucagccGCCUGucCGCGCCCCa -3' miRNA: 3'- cuCCCCCGcau------------UGGACuaGCGCGGGG- -5' |
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5732 | 3' | -59.7 | NC_001806.1 | + | 83921 | 0.71 | 0.487907 |
Target: 5'- -cGGGGGCGggGACagcugCUGuacUCGCGCCgCCg -3' miRNA: 3'- cuCCCCCGCa-UUG-----GACu--AGCGCGG-GG- -5' |
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5732 | 3' | -59.7 | NC_001806.1 | + | 9138 | 0.71 | 0.478676 |
Target: 5'- gGAGGGGGCGUcgacAGCCUGGagG-GCCa- -3' miRNA: 3'- -CUCCCCCGCA----UUGGACUagCgCGGgg -5' |
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5732 | 3' | -59.7 | NC_001806.1 | + | 147299 | 0.71 | 0.473178 |
Target: 5'- aGGGGGGUcccgggcccacCCUGGcCGCGCCCCc -3' miRNA: 3'- cUCCCCCGcauu-------GGACUaGCGCGGGG- -5' |
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5732 | 3' | -59.7 | NC_001806.1 | + | 151445 | 0.71 | 0.469531 |
Target: 5'- cGGGGGGCGgcggcggggcGGCCgcgGG-CGCGCUCCu -3' miRNA: 3'- cUCCCCCGCa---------UUGGa--CUaGCGCGGGG- -5' |
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5732 | 3' | -59.7 | NC_001806.1 | + | 97705 | 0.71 | 0.469531 |
Target: 5'- -uGGGGGCuu--UCUGAUCGCguaccaGCCCCu -3' miRNA: 3'- cuCCCCCGcauuGGACUAGCG------CGGGG- -5' |
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5732 | 3' | -59.7 | NC_001806.1 | + | 37841 | 0.71 | 0.469531 |
Target: 5'- cGGGGGGgGU-GCUUGG-CGCacGCCCCg -3' miRNA: 3'- cUCCCCCgCAuUGGACUaGCG--CGGGG- -5' |
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5732 | 3' | -59.7 | NC_001806.1 | + | 58206 | 0.71 | 0.468622 |
Target: 5'- -cGGGGGuCGUGaggaagaACUUGAggGUGCCCCc -3' miRNA: 3'- cuCCCCC-GCAU-------UGGACUagCGCGGGG- -5' |
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5732 | 3' | -59.7 | NC_001806.1 | + | 55096 | 0.71 | 0.460477 |
Target: 5'- cGGGGGGCGgAACaugcgGA-CGCGCaCCCa -3' miRNA: 3'- cUCCCCCGCaUUGga---CUaGCGCG-GGG- -5' |
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5732 | 3' | -59.7 | NC_001806.1 | + | 29220 | 0.72 | 0.43738 |
Target: 5'- cGAGGGcGaCGUGugcGCCgugugcacggaugaGAUCGCGCCCCa -3' miRNA: 3'- -CUCCCcC-GCAU---UGGa-------------CUAGCGCGGGG- -5' |
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5732 | 3' | -59.7 | NC_001806.1 | + | 95302 | 0.72 | 0.416662 |
Target: 5'- cGGGGGGCGcGGCg-GA-CGCGCCCa -3' miRNA: 3'- cUCCCCCGCaUUGgaCUaGCGCGGGg -5' |
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5732 | 3' | -59.7 | NC_001806.1 | + | 5770 | 0.72 | 0.416662 |
Target: 5'- cAGGGGGCGggGCC----CGgGCCCCg -3' miRNA: 3'- cUCCCCCGCauUGGacuaGCgCGGGG- -5' |
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5732 | 3' | -59.7 | NC_001806.1 | + | 1494 | 0.72 | 0.408208 |
Target: 5'- cGGGGGGGCGUcgUC--GUCGgGCUCCa -3' miRNA: 3'- -CUCCCCCGCAuuGGacUAGCgCGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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