miRNA display CGI


Results 41 - 60 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5732 5' -57.3 NC_001806.1 + 1333 0.67 0.79266
Target:  5'- -cGCcGCGGGg-GCGUgGCCaaGCCCGCCu -3'
miRNA:   3'- aaCGuCGUCUgaUGCA-UGG--CGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 21548 0.67 0.79266
Target:  5'- -cGCGGCgcguauccGGACcccACGgACCGCCUGUCg -3'
miRNA:   3'- aaCGUCG--------UCUGa--UGCaUGGCGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 151116 0.67 0.783499
Target:  5'- -cGCGGgGGGCUccgGCGcccccuccCCGCCCGCg -3'
miRNA:   3'- aaCGUCgUCUGA---UGCau------GGCGGGCGg -5'
5732 5' -57.3 NC_001806.1 + 28668 0.67 0.801676
Target:  5'- -gGgGGguGGggAgGaGCCGCCCGCCa -3'
miRNA:   3'- aaCgUCguCUgaUgCaUGGCGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 100860 0.67 0.801676
Target:  5'- -cGUAGguGACgauaGUGCCGaggcgCCGCCc -3'
miRNA:   3'- aaCGUCguCUGaug-CAUGGCg----GGCGG- -5'
5732 5' -57.3 NC_001806.1 + 22800 0.67 0.810539
Target:  5'- -cGUGGCcgucGAgUGCcugGCCGCCUGCCg -3'
miRNA:   3'- aaCGUCGu---CUgAUGca-UGGCGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 23940 0.67 0.810539
Target:  5'- -gGCGGCGGGgcCUGgGgggGCCGCcggagugguCCGCCg -3'
miRNA:   3'- aaCGUCGUCU--GAUgCa--UGGCG---------GGCGG- -5'
5732 5' -57.3 NC_001806.1 + 77387 0.67 0.783499
Target:  5'- -gGC-GCGGGCgcgGCGgcCgCGCCCGCg -3'
miRNA:   3'- aaCGuCGUCUGa--UGCauG-GCGGGCGg -5'
5732 5' -57.3 NC_001806.1 + 124494 0.67 0.814039
Target:  5'- cUGCGGuCGGACgccgucucgcuccgGCGgGCCGuCCuCGCCg -3'
miRNA:   3'- aACGUC-GUCUGa-------------UGCaUGGC-GG-GCGG- -5'
5732 5' -57.3 NC_001806.1 + 104413 0.67 0.801676
Target:  5'- -cGCGGCcauaacaaccGACguacgGCGUugCGCCCucGCCg -3'
miRNA:   3'- aaCGUCGu---------CUGa----UGCAugGCGGG--CGG- -5'
5732 5' -57.3 NC_001806.1 + 113989 0.67 0.801676
Target:  5'- -aGCcGCGGACgccGCGgaugACCGgCCGCa -3'
miRNA:   3'- aaCGuCGUCUGa--UGCa---UGGCgGGCGg -5'
5732 5' -57.3 NC_001806.1 + 105028 0.67 0.801676
Target:  5'- -aGCGGCuugaccuGGCUAUGcugGCCGCgauUCGCCg -3'
miRNA:   3'- aaCGUCGu------CUGAUGCa--UGGCG---GGCGG- -5'
5732 5' -57.3 NC_001806.1 + 36538 0.68 0.725986
Target:  5'- -aGCAGUGGAU--UGUGCCGCUgGUCu -3'
miRNA:   3'- aaCGUCGUCUGauGCAUGGCGGgCGG- -5'
5732 5' -57.3 NC_001806.1 + 128520 0.68 0.716063
Target:  5'- gUGCGGCAuGGCcaUGCGgGCCGCa-GCCa -3'
miRNA:   3'- aACGUCGU-CUG--AUGCaUGGCGggCGG- -5'
5732 5' -57.3 NC_001806.1 + 64201 0.68 0.716063
Target:  5'- cUGgaAGaCGGACUccAUGUAgUGCCCGCCa -3'
miRNA:   3'- aACg-UC-GUCUGA--UGCAUgGCGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 20294 0.68 0.716063
Target:  5'- -gGCGGCcccgcccccuugGGGCg--GUcCCGCCCGCCg -3'
miRNA:   3'- aaCGUCG------------UCUGaugCAuGGCGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 69291 0.68 0.706067
Target:  5'- cUGCAGCAGACguggACGUugauccagaauACCaauucGCCCuCCg -3'
miRNA:   3'- aACGUCGUCUGa---UGCA-----------UGG-----CGGGcGG- -5'
5732 5' -57.3 NC_001806.1 + 50060 0.68 0.706067
Target:  5'- -gGCGGCAGuucgcgagccucACgGCGUugCGuCCCGUCg -3'
miRNA:   3'- aaCGUCGUC------------UGaUGCAugGC-GGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 26942 0.68 0.706067
Target:  5'- cUGguGUcuGGGCcuCG-GCCGCCCGCCu -3'
miRNA:   3'- aACguCG--UCUGauGCaUGGCGGGCGG- -5'
5732 5' -57.3 NC_001806.1 + 3786 0.68 0.74558
Target:  5'- -gGCGGCucauGGCcACGgcgGCCGCCgcgugCGCCa -3'
miRNA:   3'- aaCGUCGu---CUGaUGCa--UGGCGG-----GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.