Results 1 - 20 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5735 | 3' | -52.3 | NC_001806.1 | + | 28752 | 1.11 | 0.005035 |
Target: 5'- gGAAGAAGAGGGGUCGGGAUCCAAAGGa -3' miRNA: 3'- -CUUCUUCUCCCCAGCCCUAGGUUUCC- -5' |
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5735 | 3' | -52.3 | NC_001806.1 | + | 67699 | 0.85 | 0.207416 |
Target: 5'- gGAGGGAGGGGGGggGGGGUCgAAAGGa -3' miRNA: 3'- -CUUCUUCUCCCCagCCCUAGgUUUCC- -5' |
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5735 | 3' | -52.3 | NC_001806.1 | + | 95372 | 0.79 | 0.428852 |
Target: 5'- gGAAGggGcacGGGGGUUGGGAgcucCCGGGGGc -3' miRNA: 3'- -CUUCuuC---UCCCCAGCCCUa---GGUUUCC- -5' |
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5735 | 3' | -52.3 | NC_001806.1 | + | 147220 | 0.79 | 0.456574 |
Target: 5'- gGAAGAGGcggcccccgcGGGGGUCGGGG-CCGAGGa -3' miRNA: 3'- -CUUCUUC----------UCCCCAGCCCUaGGUUUCc -5' |
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5735 | 3' | -52.3 | NC_001806.1 | + | 2860 | 0.78 | 0.52471 |
Target: 5'- cGGGGAGGGGGGcgCGGGcGUCCGAgccGGGg -3' miRNA: 3'- cUUCUUCUCCCCa-GCCC-UAGGUU---UCC- -5' |
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5735 | 3' | -52.3 | NC_001806.1 | + | 6547 | 0.78 | 0.504805 |
Target: 5'- cGGAGGAGGGGGGacgCGGGGg-CGGAGGa -3' miRNA: 3'- -CUUCUUCUCCCCa--GCCCUagGUUUCC- -5' |
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5735 | 3' | -52.3 | NC_001806.1 | + | 6503 | 0.78 | 0.504805 |
Target: 5'- cGGAGGAGGGGGGacgCGGGGg-CGGAGGa -3' miRNA: 3'- -CUUCUUCUCCCCa--GCCCUagGUUUCC- -5' |
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5735 | 3' | -52.3 | NC_001806.1 | + | 6459 | 0.78 | 0.504805 |
Target: 5'- cGGAGGAGGGGGGacgCGGGGg-CGGAGGa -3' miRNA: 3'- -CUUCUUCUCCCCa--GCCCUagGUUUCC- -5' |
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5735 | 3' | -52.3 | NC_001806.1 | + | 10389 | 0.78 | 0.485232 |
Target: 5'- cGggGggGcGGGGGgaggCGGGAgCCGGGGGg -3' miRNA: 3'- -CuuCuuC-UCCCCa---GCCCUaGGUUUCC- -5' |
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5735 | 3' | -52.3 | NC_001806.1 | + | 34789 | 0.76 | 0.61718 |
Target: 5'- gGggGggGGGGGGgggCGGGAaaCCAAguAGGc -3' miRNA: 3'- -CuuCuuCUCCCCa--GCCCUa-GGUU--UCC- -5' |
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5735 | 3' | -52.3 | NC_001806.1 | + | 6414 | 0.76 | 0.606759 |
Target: 5'- cGGAGGAGGGGGGgacgCGGGGguggaGGAGGg -3' miRNA: 3'- -CUUCUUCUCCCCa---GCCCUagg--UUUCC- -5' |
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5735 | 3' | -52.3 | NC_001806.1 | + | 31369 | 0.76 | 0.606759 |
Target: 5'- uGggGAgGGGGGGGUCGGGcgCUggGuGGu -3' miRNA: 3'- -CuuCU-UCUCCCCAGCCCuaGGuuU-CC- -5' |
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5735 | 3' | -52.3 | NC_001806.1 | + | 29647 | 0.75 | 0.658896 |
Target: 5'- gGAGGAGGAGGGGggGGGAg--GGAGGa -3' miRNA: 3'- -CUUCUUCUCCCCagCCCUaggUUUCC- -5' |
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5735 | 3' | -52.3 | NC_001806.1 | + | 25242 | 0.74 | 0.720609 |
Target: 5'- aGggGgcGAGGGG-CGGGAgggggCGAGGGg -3' miRNA: 3'- -CuuCuuCUCCCCaGCCCUag---GUUUCC- -5' |
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5735 | 3' | -52.3 | NC_001806.1 | + | 25208 | 0.74 | 0.720609 |
Target: 5'- aGggGgcGAGGGG-CGGGAgggggCGAGGGg -3' miRNA: 3'- -CuuCuuCUCCCCaGCCCUag---GUUUCC- -5' |
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5735 | 3' | -52.3 | NC_001806.1 | + | 25174 | 0.74 | 0.720609 |
Target: 5'- aGggGgcGAGGGG-CGGGAgggggCGAGGGg -3' miRNA: 3'- -CuuCuuCUCCCCaGCCCUag---GUUUCC- -5' |
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5735 | 3' | -52.3 | NC_001806.1 | + | 25140 | 0.74 | 0.720609 |
Target: 5'- aGggGgcGAGGGG-CGGGAgggggCGAGGGg -3' miRNA: 3'- -CuuCuuCUCCCCaGCCCUag---GUUUCC- -5' |
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5735 | 3' | -52.3 | NC_001806.1 | + | 25106 | 0.74 | 0.720609 |
Target: 5'- aGggGgcGAGGGG-CGGGAgggggCGAGGGg -3' miRNA: 3'- -CuuCuuCUCCCCaGCCCUag---GUUUCC- -5' |
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5735 | 3' | -52.3 | NC_001806.1 | + | 11304 | 0.74 | 0.720609 |
Target: 5'- aGggGAGGcguuGGGGUgggugucgUGGGGUCCAcGGGg -3' miRNA: 3'- -CuuCUUCu---CCCCA--------GCCCUAGGUuUCC- -5' |
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5735 | 3' | -52.3 | NC_001806.1 | + | 25276 | 0.74 | 0.720609 |
Target: 5'- aGggGgcGAGGGG-CGGGAgggggCGAGGGg -3' miRNA: 3'- -CuuCuuCUCCCCaGCCCUag---GUUUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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