miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5735 3' -52.3 NC_001806.1 + 151274 0.68 0.957612
Target:  5'- cGGGcGGuGGGGGcCGGGG-CCGGGGGg -3'
miRNA:   3'- cUUCuUC-UCCCCaGCCCUaGGUUUCC- -5'
5735 3' -52.3 NC_001806.1 + 151056 0.71 0.857936
Target:  5'- cGAGAAGcgcacccgcgcGGGGGUCgcgGGGGUCgCGGGGGu -3'
miRNA:   3'- cUUCUUC-----------UCCCCAG---CCCUAG-GUUUCC- -5'
5735 3' -52.3 NC_001806.1 + 149148 0.74 0.720609
Target:  5'- -cGGAAGAGGGGggagaaaGGGGUcugcaaCCAAAGGu -3'
miRNA:   3'- cuUCUUCUCCCCag-----CCCUA------GGUUUCC- -5'
5735 3' -52.3 NC_001806.1 + 148180 0.66 0.98668
Target:  5'- --cGuGGGGGGGcgCGGGGcgUCCGgcGGGGg -3'
miRNA:   3'- cuuCuUCUCCCCa-GCCCU--AGGU--UUCC- -5'
5735 3' -52.3 NC_001806.1 + 147475 0.72 0.798105
Target:  5'- aGAGGcggcGGAGGGGagCGGGGcggcgCCGGAGGg -3'
miRNA:   3'- -CUUCu---UCUCCCCa-GCCCUa----GGUUUCC- -5'
5735 3' -52.3 NC_001806.1 + 147387 0.66 0.981054
Target:  5'- --cGAGGGGGGGacgCGuGGA-CUggGGGg -3'
miRNA:   3'- cuuCUUCUCCCCa--GC-CCUaGGuuUCC- -5'
5735 3' -52.3 NC_001806.1 + 147220 0.79 0.456574
Target:  5'- gGAAGAGGcggcccccgcGGGGGUCGGGG-CCGAGGa -3'
miRNA:   3'- -CUUCUUC----------UCCCCAGCCCUaGGUUUCc -5'
5735 3' -52.3 NC_001806.1 + 145681 0.66 0.978831
Target:  5'- cGggGGugGGAaGGGUCGGGGga-GGGGGg -3'
miRNA:   3'- -CuuCU--UCUcCCCAGCCCUaggUUUCC- -5'
5735 3' -52.3 NC_001806.1 + 145546 0.68 0.957612
Target:  5'- -uGGggGGGGGGagugCGGGGga-GGGGGg -3'
miRNA:   3'- cuUCuuCUCCCCa---GCCCUaggUUUCC- -5'
5735 3' -52.3 NC_001806.1 + 145237 0.68 0.959113
Target:  5'- -uAGAGGGGGGGgacccaaacgacaGGGGgcgccCCAGAGGc -3'
miRNA:   3'- cuUCUUCUCCCCag-----------CCCUa----GGUUUCC- -5'
5735 3' -52.3 NC_001806.1 + 143330 0.67 0.971007
Target:  5'- aGggGggGGGGGGgcgcUGGuuGGUCaaaAAAGGg -3'
miRNA:   3'- -CuuCuuCUCCCCa---GCC--CUAGg--UUUCC- -5'
5735 3' -52.3 NC_001806.1 + 134306 0.66 0.981054
Target:  5'- aGAGAAcGGGGGG-CGGGuuguuggCCAGcAGGu -3'
miRNA:   3'- cUUCUU-CUCCCCaGCCCua-----GGUU-UCC- -5'
5735 3' -52.3 NC_001806.1 + 127405 0.68 0.955289
Target:  5'- aGggGggGGGGGGgacggugauaguaaCGGGAUCgGAc-- -3'
miRNA:   3'- -CuuCuuCUCCCCa-------------GCCCUAGgUUucc -5'
5735 3' -52.3 NC_001806.1 + 120322 0.68 0.945142
Target:  5'- gGggGAcGGGGcGGUCGGGggCgGcGGGu -3'
miRNA:   3'- -CuuCUuCUCC-CCAGCCCuaGgUuUCC- -5'
5735 3' -52.3 NC_001806.1 + 117067 0.74 0.720609
Target:  5'- cGggGggGuGGGGgUGGGcAUCCAGGGa -3'
miRNA:   3'- -CuuCuuCuCCCCaGCCC-UAGGUUUCc -5'
5735 3' -52.3 NC_001806.1 + 111343 0.69 0.930481
Target:  5'- cGGGggGGGGGGUauauaaggccUGGGAUCCc---- -3'
miRNA:   3'- cUUCuuCUCCCCA----------GCCCUAGGuuucc -5'
5735 3' -52.3 NC_001806.1 + 103427 0.66 0.983097
Target:  5'- cAAGAuGGGGGGU-GGGAUgaGGGGGc -3'
miRNA:   3'- cUUCUuCUCCCCAgCCCUAggUUUCC- -5'
5735 3' -52.3 NC_001806.1 + 99681 0.67 0.971007
Target:  5'- cGggGGAGuGGGGgcaUGGGAcgCCGGacccuGGGg -3'
miRNA:   3'- -CuuCUUCuCCCCa--GCCCUa-GGUU-----UCC- -5'
5735 3' -52.3 NC_001806.1 + 99578 0.66 0.98668
Target:  5'- uGgcGgcGGGGGGgaacgCGGGcUCCGucGGu -3'
miRNA:   3'- -CuuCuuCUCCCCa----GCCCuAGGUuuCC- -5'
5735 3' -52.3 NC_001806.1 + 95372 0.79 0.428852
Target:  5'- gGAAGggGcacGGGGGUUGGGAgcucCCGGGGGc -3'
miRNA:   3'- -CUUCuuC---UCCCCAGCCCUa---GGUUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.