Results 41 - 60 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5735 | 3' | -52.3 | NC_001806.1 | + | 44744 | 0.7 | 0.907464 |
Target: 5'- -uGGAGGGGGGGgcgccaguugCGGGAacugCCGcAGGg -3' miRNA: 3'- cuUCUUCUCCCCa---------GCCCUa---GGUuUCC- -5' |
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5735 | 3' | -52.3 | NC_001806.1 | + | 65290 | 0.7 | 0.894482 |
Target: 5'- cGggGAGGAGGaGGg-GGGcccCCAAGGGc -3' miRNA: 3'- -CuuCUUCUCC-CCagCCCua-GGUUUCC- -5' |
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5735 | 3' | -52.3 | NC_001806.1 | + | 9510 | 0.7 | 0.887632 |
Target: 5'- -uGGuGGAGGGagaGUCGGGucucUCCGGGGGg -3' miRNA: 3'- cuUCuUCUCCC---CAGCCCu---AGGUUUCC- -5' |
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5735 | 3' | -52.3 | NC_001806.1 | + | 11792 | 0.7 | 0.887632 |
Target: 5'- cGAGGGAGcGGGGaUGGuGGUCgAGGGGg -3' miRNA: 3'- -CUUCUUCuCCCCaGCC-CUAGgUUUCC- -5' |
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5735 | 3' | -52.3 | NC_001806.1 | + | 32166 | 0.71 | 0.873232 |
Target: 5'- uGAAGGAGGGGGGgCGGugcuucuuaGAgaccgCCGGGGGa -3' miRNA: 3'- -CUUCUUCUCCCCaGCC---------CUa----GGUUUCC- -5' |
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5735 | 3' | -52.3 | NC_001806.1 | + | 151056 | 0.71 | 0.857936 |
Target: 5'- cGAGAAGcgcacccgcgcGGGGGUCgcgGGGGUCgCGGGGGu -3' miRNA: 3'- cUUCUUC-----------UCCCCAG---CCCUAG-GUUUCC- -5' |
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5735 | 3' | -52.3 | NC_001806.1 | + | 29994 | 0.71 | 0.849158 |
Target: 5'- cGggGggGuuGGGGUUGGGGUUgggguuguugaagCGGAGGc -3' miRNA: 3'- -CuuCuuCu-CCCCAGCCCUAG-------------GUUUCC- -5' |
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5735 | 3' | -52.3 | NC_001806.1 | + | 34474 | 0.71 | 0.841791 |
Target: 5'- aGAAGgcGGGGGGggGGGAgaCGGGGGg -3' miRNA: 3'- -CUUCuuCUCCCCagCCCUagGUUUCC- -5' |
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5735 | 3' | -52.3 | NC_001806.1 | + | 34953 | 0.72 | 0.824854 |
Target: 5'- gGggGGAGAGGGGagaGGGGgggaGAGGGg -3' miRNA: 3'- -CuuCUUCUCCCCag-CCCUagg-UUUCC- -5' |
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5735 | 3' | -52.3 | NC_001806.1 | + | 34987 | 0.72 | 0.824854 |
Target: 5'- gGggGGAGAGGGGagaGGGGgggaGAGGGg -3' miRNA: 3'- -CuuCUUCUCCCCag-CCCUagg-UUUCC- -5' |
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5735 | 3' | -52.3 | NC_001806.1 | + | 35021 | 0.72 | 0.824854 |
Target: 5'- gGggGGAGAGGGGagaGGGGgggaGAGGGg -3' miRNA: 3'- -CuuCUUCUCCCCag-CCCUagg-UUUCC- -5' |
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5735 | 3' | -52.3 | NC_001806.1 | + | 34913 | 0.72 | 0.816109 |
Target: 5'- gGGAGAGGGGGGGagaGGGAga-GGGGGg -3' miRNA: 3'- -CUUCUUCUCCCCag-CCCUaggUUUCC- -5' |
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5735 | 3' | -52.3 | NC_001806.1 | + | 147475 | 0.72 | 0.798105 |
Target: 5'- aGAGGcggcGGAGGGGagCGGGGcggcgCCGGAGGg -3' miRNA: 3'- -CUUCu---UCUCCCCa-GCCCUa----GGUUUCC- -5' |
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5735 | 3' | -52.3 | NC_001806.1 | + | 20989 | 0.73 | 0.769952 |
Target: 5'- cGAcGgcGGGGGucGUCGGGGUCCGuGGGu -3' miRNA: 3'- -CUuCuuCUCCC--CAGCCCUAGGUuUCC- -5' |
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5735 | 3' | -52.3 | NC_001806.1 | + | 56668 | 0.73 | 0.7603 |
Target: 5'- uGGGAucguuGGGGGGUCGGGGgggaCGGGGGc -3' miRNA: 3'- cUUCUu----CUCCCCAGCCCUag--GUUUCC- -5' |
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5735 | 3' | -52.3 | NC_001806.1 | + | 28177 | 0.73 | 0.75053 |
Target: 5'- cGAGguGAGGGGcCGGGcgCCAugucuGGGg -3' miRNA: 3'- cUUCuuCUCCCCaGCCCuaGGUu----UCC- -5' |
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5735 | 3' | -52.3 | NC_001806.1 | + | 83808 | 0.73 | 0.740652 |
Target: 5'- gGgcGAGGAGGGGgCGGGGUCgGcgcGGGa -3' miRNA: 3'- -CuuCUUCUCCCCaGCCCUAGgUu--UCC- -5' |
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5735 | 3' | -52.3 | NC_001806.1 | + | 117067 | 0.74 | 0.720609 |
Target: 5'- cGggGggGuGGGGgUGGGcAUCCAGGGa -3' miRNA: 3'- -CuuCuuCuCCCCaGCCC-UAGGUUUCc -5' |
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5735 | 3' | -52.3 | NC_001806.1 | + | 149148 | 0.74 | 0.720609 |
Target: 5'- -cGGAAGAGGGGggagaaaGGGGUcugcaaCCAAAGGu -3' miRNA: 3'- cuUCUUCUCCCCag-----CCCUA------GGUUUCC- -5' |
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5735 | 3' | -52.3 | NC_001806.1 | + | 25378 | 0.74 | 0.720609 |
Target: 5'- aGggGgcGAGGGG-CGGGAgggggCGAGGGg -3' miRNA: 3'- -CuuCuuCUCCCCaGCCCUag---GUUUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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