miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5736 3' -56.4 NC_001806.1 + 147683 0.67 0.846544
Target:  5'- -------cCGGGGGCC-GGGGCGCgGg -3'
miRNA:   3'- auauauauGUCCCUGGcCCCCGCGgU- -5'
5736 3' -56.4 NC_001806.1 + 2872 0.67 0.846544
Target:  5'- ------cGCGGGcGuccgaGCCGGGGGCGuCCGc -3'
miRNA:   3'- auauauaUGUCC-C-----UGGCCCCCGC-GGU- -5'
5736 3' -56.4 NC_001806.1 + 46809 0.67 0.846544
Target:  5'- ------gACGGGGACCGGgacuGGGUGgCGg -3'
miRNA:   3'- auauauaUGUCCCUGGCC----CCCGCgGU- -5'
5736 3' -56.4 NC_001806.1 + 65468 0.67 0.846544
Target:  5'- -------cCGGGucCUGGGGGCGCCc -3'
miRNA:   3'- auauauauGUCCcuGGCCCCCGCGGu -5'
5736 3' -56.4 NC_001806.1 + 50651 0.67 0.838374
Target:  5'- ----cGUGCGGGGACgCGcaccGGCGCCGg -3'
miRNA:   3'- auauaUAUGUCCCUG-GCcc--CCGCGGU- -5'
5736 3' -56.4 NC_001806.1 + 19529 0.67 0.838374
Target:  5'- ------gGCGGGGAUCGGagagcGGGaCGCCGc -3'
miRNA:   3'- auauauaUGUCCCUGGCC-----CCC-GCGGU- -5'
5736 3' -56.4 NC_001806.1 + 15858 0.67 0.838374
Target:  5'- ---------uGGGGCCGcGGGGgGCCGa -3'
miRNA:   3'- auauauauguCCCUGGC-CCCCgCGGU- -5'
5736 3' -56.4 NC_001806.1 + 147794 0.67 0.830013
Target:  5'- ------gGCGGGGGgCGGagccuggcauGGGCGCCGc -3'
miRNA:   3'- auauauaUGUCCCUgGCC----------CCCGCGGU- -5'
5736 3' -56.4 NC_001806.1 + 135070 0.67 0.830013
Target:  5'- ------cGCGGGGacgcGCCGGGccggaaaucGGCGCCGa -3'
miRNA:   3'- auauauaUGUCCC----UGGCCC---------CCGCGGU- -5'
5736 3' -56.4 NC_001806.1 + 25537 0.67 0.82147
Target:  5'- ------gGCuGGGGCCGGGGaGgGCUg -3'
miRNA:   3'- auauauaUGuCCCUGGCCCC-CgCGGu -5'
5736 3' -56.4 NC_001806.1 + 25569 0.67 0.82147
Target:  5'- ------gGCuGGGGCCGGGGaGgGCUg -3'
miRNA:   3'- auauauaUGuCCCUGGCCCC-CgCGGu -5'
5736 3' -56.4 NC_001806.1 + 25601 0.67 0.82147
Target:  5'- ------gGCuGGGGCCGGGGaGgGCUg -3'
miRNA:   3'- auauauaUGuCCCUGGCCCC-CgCGGu -5'
5736 3' -56.4 NC_001806.1 + 16851 0.67 0.820606
Target:  5'- gGUGUGggaagguUugGGGGucuCCGGGGGCGgggaguCCAg -3'
miRNA:   3'- aUAUAU-------AugUCCCu--GGCCCCCGC------GGU- -5'
5736 3' -56.4 NC_001806.1 + 24629 0.67 0.812751
Target:  5'- ------cGCuGGGGCCuGGGcGCGCCGc -3'
miRNA:   3'- auauauaUGuCCCUGGcCCC-CGCGGU- -5'
5736 3' -56.4 NC_001806.1 + 59997 0.67 0.812751
Target:  5'- -------uCGGGGAcCCGGGGGacgGCCGg -3'
miRNA:   3'- auauauauGUCCCU-GGCCCCCg--CGGU- -5'
5736 3' -56.4 NC_001806.1 + 95443 0.67 0.812751
Target:  5'- ------gGCAGGGGCCcgagacgugGGGGGacauCGCCAc -3'
miRNA:   3'- auauauaUGUCCCUGG---------CCCCC----GCGGU- -5'
5736 3' -56.4 NC_001806.1 + 28589 0.67 0.803865
Target:  5'- ------cACAaGGACCGGGGuCGCCGu -3'
miRNA:   3'- auauauaUGUcCCUGGCCCCcGCGGU- -5'
5736 3' -56.4 NC_001806.1 + 48594 0.67 0.803865
Target:  5'- ----aGUACGGuGGGuaGGGGGCGCg- -3'
miRNA:   3'- auauaUAUGUC-CCUggCCCCCGCGgu -5'
5736 3' -56.4 NC_001806.1 + 48469 0.67 0.802968
Target:  5'- --cAUGUugGGGGACgGGGauuccccGGgGCCGg -3'
miRNA:   3'- auaUAUAugUCCCUGgCCC-------CCgCGGU- -5'
5736 3' -56.4 NC_001806.1 + 66411 0.68 0.794821
Target:  5'- cGUAcGUACAGGugcGugCGguGGGGCGCCc -3'
miRNA:   3'- aUAUaUAUGUCC---CugGC--CCCCGCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.