miRNA display CGI


Results 21 - 39 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5737 3' -54.5 NC_001806.1 + 43790 0.68 0.855019
Target:  5'- gUUACGCUGGcGCCuGCCGCCc----- -3'
miRNA:   3'- -AAUGUGACCuUGGcCGGCGGuacaac -5'
5737 3' -54.5 NC_001806.1 + 68558 0.68 0.846925
Target:  5'- aUGCGCUGGAuuccGCCGGCCuGCgCAc---- -3'
miRNA:   3'- aAUGUGACCU----UGGCCGG-CG-GUacaac -5'
5737 3' -54.5 NC_001806.1 + 24627 0.68 0.846925
Target:  5'- -cGCGCUGGGGCCugGGCgCGCCGc---- -3'
miRNA:   3'- aaUGUGACCUUGG--CCG-GCGGUacaac -5'
5737 3' -54.5 NC_001806.1 + 148022 0.68 0.83013
Target:  5'- ---gGCgGGAGCCGccGCCGCCGcugcUGUUGg -3'
miRNA:   3'- aaugUGaCCUUGGC--CGGCGGU----ACAAC- -5'
5737 3' -54.5 NC_001806.1 + 51591 0.68 0.83013
Target:  5'- -gGCGCUGGGcgagguggagcuGcCCGGCgGCCA-GUUGa -3'
miRNA:   3'- aaUGUGACCU------------U-GGCCGgCGGUaCAAC- -5'
5737 3' -54.5 NC_001806.1 + 68592 0.69 0.798036
Target:  5'- -gGCcCUGGGGCCGGUccgcguccgccagugCGCCGUGgagUGg -3'
miRNA:   3'- aaUGuGACCUUGGCCG---------------GCGGUACa--AC- -5'
5737 3' -54.5 NC_001806.1 + 65672 0.7 0.775479
Target:  5'- cUGCGCUGGGgccGCCGGCCuCC-UGUc- -3'
miRNA:   3'- aAUGUGACCU---UGGCCGGcGGuACAac -5'
5737 3' -54.5 NC_001806.1 + 130831 0.7 0.736227
Target:  5'- cUGCAUUGGGACuCGGCgGCCggGg-- -3'
miRNA:   3'- aAUGUGACCUUG-GCCGgCGGuaCaac -5'
5737 3' -54.5 NC_001806.1 + 3814 0.71 0.673646
Target:  5'- gUGCGCcaGGccccagccgaagcGGCCGGCCGCCAUGg-- -3'
miRNA:   3'- aAUGUGa-CC-------------UUGGCCGGCGGUACaac -5'
5737 3' -54.5 NC_001806.1 + 28422 0.72 0.664248
Target:  5'- aUAUACaGGGACCggGGUCGCCcUGUUGg -3'
miRNA:   3'- aAUGUGaCCUUGG--CCGGCGGuACAAC- -5'
5737 3' -54.5 NC_001806.1 + 22435 0.72 0.642245
Target:  5'- ---gGCUGGGGCCuggcgcacgcggcGGCCGCCGUGg-- -3'
miRNA:   3'- aaugUGACCUUGG-------------CCGGCGGUACaac -5'
5737 3' -54.5 NC_001806.1 + 108856 0.73 0.601344
Target:  5'- -gGCugUGGuuCCGGCCGCCAg---- -3'
miRNA:   3'- aaUGugACCuuGGCCGGCGGUacaac -5'
5737 3' -54.5 NC_001806.1 + 28173 0.73 0.590896
Target:  5'- -aGCGCgaggugaGGGGCCGGgCGCCAUGUcUGg -3'
miRNA:   3'- aaUGUGa------CCUUGGCCgGCGGUACA-AC- -5'
5737 3' -54.5 NC_001806.1 + 28368 0.73 0.58048
Target:  5'- aUAUACaGGGACCGGgggCGCCAUGUUa -3'
miRNA:   3'- aAUGUGaCCUUGGCCg--GCGGUACAAc -5'
5737 3' -54.5 NC_001806.1 + 28587 0.73 0.570102
Target:  5'- -cACACaaGGACCggGGUCGCCGUGUUGg -3'
miRNA:   3'- aaUGUGacCUUGG--CCGGCGGUACAAC- -5'
5737 3' -54.5 NC_001806.1 + 70132 0.74 0.539273
Target:  5'- -cGCGCUGaucacccuccucGAACCGGCCGCCcgGg-- -3'
miRNA:   3'- aaUGUGAC------------CUUGGCCGGCGGuaCaac -5'
5737 3' -54.5 NC_001806.1 + 76274 0.75 0.479525
Target:  5'- -gGCGCUGGAcCUGGCCGCCGc---- -3'
miRNA:   3'- aaUGUGACCUuGGCCGGCGGUacaac -5'
5737 3' -54.5 NC_001806.1 + 28303 0.9 0.059317
Target:  5'- aUACACgGGAGCCGGgCGCCAUGUUGg -3'
miRNA:   3'- aAUGUGaCCUUGGCCgGCGGUACAAC- -5'
5737 3' -54.5 NC_001806.1 + 28262 1.07 0.004678
Target:  5'- cUUACACUGGAACCGGCCGCCAUGUUGg -3'
miRNA:   3'- -AAUGUGACCUUGGCCGGCGGUACAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.