miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5737 5' -58.7 NC_001806.1 + 59045 0.67 0.740778
Target:  5'- cCUCc-ACGgGGGAGgCGGGgGCCAc- -3'
miRNA:   3'- -GAGuaUGUgCCCUCgGCCCgCGGUac -5'
5737 5' -58.7 NC_001806.1 + 109452 0.67 0.740778
Target:  5'- -cCGUGCGCGGGuugUGGGCGUCAa- -3'
miRNA:   3'- gaGUAUGUGCCCucgGCCCGCGGUac -5'
5737 5' -58.7 NC_001806.1 + 132649 0.67 0.721443
Target:  5'- cCUgGUGCGCGGG-GCCGcGGcCGCUu-- -3'
miRNA:   3'- -GAgUAUGUGCCCuCGGC-CC-GCGGuac -5'
5737 5' -58.7 NC_001806.1 + 30410 0.67 0.721443
Target:  5'- -gCGgcuCGgGGGGGCCGGGCGUgGa- -3'
miRNA:   3'- gaGUau-GUgCCCUCGGCCCGCGgUac -5'
5737 5' -58.7 NC_001806.1 + 48049 0.67 0.71166
Target:  5'- gCUgGUGCGCagcgcggcuacgGaGGAGCCagGGGCGCCGUu -3'
miRNA:   3'- -GAgUAUGUG------------C-CCUCGG--CCCGCGGUAc -5'
5737 5' -58.7 NC_001806.1 + 2839 0.67 0.71166
Target:  5'- -gCGUGgAgGGGGGCgCGGGCGCgGg- -3'
miRNA:   3'- gaGUAUgUgCCCUCG-GCCCGCGgUac -5'
5737 5' -58.7 NC_001806.1 + 18310 0.67 0.71166
Target:  5'- -aCAUACAaGGGGGUCgGGGCGaCCGg- -3'
miRNA:   3'- gaGUAUGUgCCCUCGG-CCCGC-GGUac -5'
5737 5' -58.7 NC_001806.1 + 33615 0.68 0.701811
Target:  5'- -aCcgGCGCGGG-GCgGGGgGCCGg- -3'
miRNA:   3'- gaGuaUGUGCCCuCGgCCCgCGGUac -5'
5737 5' -58.7 NC_001806.1 + 83661 0.68 0.691905
Target:  5'- -cCGUACcgacgGCGGGGuGcCCGGGCGgCAUGc -3'
miRNA:   3'- gaGUAUG-----UGCCCU-C-GGCCCGCgGUAC- -5'
5737 5' -58.7 NC_001806.1 + 106847 0.68 0.691905
Target:  5'- -gCAUACGCggaguuuuucucGGGGGaCgCGGGCGCCGa- -3'
miRNA:   3'- gaGUAUGUG------------CCCUC-G-GCCCGCGGUac -5'
5737 5' -58.7 NC_001806.1 + 148683 0.68 0.685938
Target:  5'- -gCAUGCACGGGAaggugucgagcgcagGUgGGGCGCgAUc -3'
miRNA:   3'- gaGUAUGUGCCCU---------------CGgCCCGCGgUAc -5'
5737 5' -58.7 NC_001806.1 + 62633 0.68 0.681951
Target:  5'- gCUCcagGCACGGGAGCgCcuGCGCCAc- -3'
miRNA:   3'- -GAGua-UGUGCCCUCG-GccCGCGGUac -5'
5737 5' -58.7 NC_001806.1 + 24864 0.68 0.681951
Target:  5'- -cCGUGCugGcGGcGgCGGGgGCCGUGg -3'
miRNA:   3'- gaGUAUGugC-CCuCgGCCCgCGGUAC- -5'
5737 5' -58.7 NC_001806.1 + 100490 0.68 0.671958
Target:  5'- gUCAcccugcgGCGCGGcagcgaucGAGCCGGGCGgUAUGu -3'
miRNA:   3'- gAGUa------UGUGCC--------CUCGGCCCGCgGUAC- -5'
5737 5' -58.7 NC_001806.1 + 28516 0.68 0.661933
Target:  5'- aCUCAgACGCaGGGcCCGGGguCGCCGUGg -3'
miRNA:   3'- -GAGUaUGUGcCCUcGGCCC--GCGGUAC- -5'
5737 5' -58.7 NC_001806.1 + 62926 0.69 0.641821
Target:  5'- cCUCGUAC-CGcG-GCCGGGCGUCcgGa -3'
miRNA:   3'- -GAGUAUGuGCcCuCGGCCCGCGGuaC- -5'
5737 5' -58.7 NC_001806.1 + 28366 0.69 0.641821
Target:  5'- -aUAUAUACaGGGA-CCggGGGCGCCAUGu -3'
miRNA:   3'- gaGUAUGUG-CCCUcGG--CCCGCGGUAC- -5'
5737 5' -58.7 NC_001806.1 + 146772 0.69 0.641821
Target:  5'- aCUCcgACGCGGGGGCCgucGGGUaCUcgGg -3'
miRNA:   3'- -GAGuaUGUGCCCUCGG---CCCGcGGuaC- -5'
5737 5' -58.7 NC_001806.1 + 71605 0.69 0.640814
Target:  5'- aCUCGUAgccuaauCAgGGGAaCCGGG-GCCAUGg -3'
miRNA:   3'- -GAGUAU-------GUgCCCUcGGCCCgCGGUAC- -5'
5737 5' -58.7 NC_001806.1 + 130435 0.69 0.611616
Target:  5'- cCUCAggGCccagcgcgaucuACGGGAGCUGcGGUGCCGg- -3'
miRNA:   3'- -GAGUa-UG------------UGCCCUCGGC-CCGCGGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.