miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5740 3' -53.3 NC_001806.1 + 141687 0.66 0.975844
Target:  5'- cCGGGGuGGUgauaUGGGUC-CUGGCCg--- -3'
miRNA:   3'- -GCCUC-CCAa---ACCUAGaGACUGGacuc -5'
5740 3' -53.3 NC_001806.1 + 111342 0.69 0.89338
Target:  5'- gCGGGGGGgg-GGGUauaUaaGGCCUGGGa -3'
miRNA:   3'- -GCCUCCCaaaCCUAg--AgaCUGGACUC- -5'
5740 3' -53.3 NC_001806.1 + 31376 0.69 0.872098
Target:  5'- gGGGGGGUcgGGcgcugggugGUCUCUGGCCg--- -3'
miRNA:   3'- gCCUCCCAaaCC---------UAGAGACUGGacuc -5'
5740 3' -53.3 NC_001806.1 + 25447 1.1 0.004707
Target:  5'- cCGGAGGGUUUGGAUCUCUGACCUGAGa -3'
miRNA:   3'- -GCCUCCCAAACCUAGAGACUGGACUC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.