Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5740 | 5' | -54.7 | NC_001806.1 | + | 79266 | 0.65 | 0.953401 |
Target: 5'- -gUUGGGGcGGAGGgcucguugggGCCCGGaagccugGCCCCc -3' miRNA: 3'- guGACUCCaUCUCUa---------CGGGCU-------UGGGG- -5' |
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5740 | 5' | -54.7 | NC_001806.1 | + | 100612 | 0.71 | 0.735005 |
Target: 5'- uCGCcugGAGGUAGGuGUGUCCGGcgAUCCCg -3' miRNA: 3'- -GUGa--CUCCAUCUcUACGGGCU--UGGGG- -5' |
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5740 | 5' | -54.7 | NC_001806.1 | + | 117672 | 0.7 | 0.7641 |
Target: 5'- uCGCaGuGGUAGAagagaagcucGggGCCCGAGCCCg -3' miRNA: 3'- -GUGaCuCCAUCU----------CuaCGGGCUUGGGg -5' |
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5740 | 5' | -54.7 | NC_001806.1 | + | 147404 | 0.7 | 0.772632 |
Target: 5'- gACUGGGGggAGGGGUuuuccugGCCCG-ACCCg -3' miRNA: 3'- gUGACUCCa-UCUCUA-------CGGGCuUGGGg -5' |
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5740 | 5' | -54.7 | NC_001806.1 | + | 91271 | 0.7 | 0.773574 |
Target: 5'- uCACcGAGGUGGAcGAcgccgGCCCGGcggACCCa -3' miRNA: 3'- -GUGaCUCCAUCU-CUa----CGGGCU---UGGGg -5' |
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5740 | 5' | -54.7 | NC_001806.1 | + | 82412 | 0.7 | 0.78292 |
Target: 5'- gGCUgGAGGgAGAGuagggGCCCGccuCCCCg -3' miRNA: 3'- gUGA-CUCCaUCUCua---CGGGCuu-GGGG- -5' |
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5740 | 5' | -54.7 | NC_001806.1 | + | 56675 | 0.69 | 0.818846 |
Target: 5'- -gUUGGGGggucgGGGGGgacggggGCCCGGgaACCCCg -3' miRNA: 3'- guGACUCCa----UCUCUa------CGGGCU--UGGGG- -5' |
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5740 | 5' | -54.7 | NC_001806.1 | + | 57029 | 0.69 | 0.82657 |
Target: 5'- gCACUG-GGUGGccggGCCCGGggccgggGCCCCc -3' miRNA: 3'- -GUGACuCCAUCucuaCGGGCU-------UGGGG- -5' |
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5740 | 5' | -54.7 | NC_001806.1 | + | 5670 | 0.69 | 0.82742 |
Target: 5'- gCGC-GAGGgcGGGuggGUCCGcGCCCCg -3' miRNA: 3'- -GUGaCUCCauCUCua-CGGGCuUGGGG- -5' |
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5740 | 5' | -54.7 | NC_001806.1 | + | 100396 | 0.71 | 0.725113 |
Target: 5'- gCGCgGGGGccGGGGUGCCCGAugUCg -3' miRNA: 3'- -GUGaCUCCauCUCUACGGGCUugGGg -5' |
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5740 | 5' | -54.7 | NC_001806.1 | + | 8056 | 0.71 | 0.725113 |
Target: 5'- -uUUGGGuGUGGGGAcccgGCCCuAACCCCa -3' miRNA: 3'- guGACUC-CAUCUCUa---CGGGcUUGGGG- -5' |
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5740 | 5' | -54.7 | NC_001806.1 | + | 109358 | 0.72 | 0.705095 |
Target: 5'- uCGCUGAcGGUGGcccgcuuGgcGCCCGcGCCCCc -3' miRNA: 3'- -GUGACU-CCAUCu------CuaCGGGCuUGGGG- -5' |
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5740 | 5' | -54.7 | NC_001806.1 | + | 15187 | 0.79 | 0.306894 |
Target: 5'- gACUGGGGUAG-GGUGUCaCGggUCCCa -3' miRNA: 3'- gUGACUCCAUCuCUACGG-GCuuGGGG- -5' |
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5740 | 5' | -54.7 | NC_001806.1 | + | 74981 | 0.75 | 0.521879 |
Target: 5'- uGCUGGGGcaguaccGAGAUGCCCugGAGCaCCCg -3' miRNA: 3'- gUGACUCCau-----CUCUACGGG--CUUG-GGG- -5' |
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5740 | 5' | -54.7 | NC_001806.1 | + | 5768 | 0.74 | 0.541763 |
Target: 5'- gGCaGGGGgcGGG--GCCCGGGCCCCg -3' miRNA: 3'- gUGaCUCCauCUCuaCGGGCUUGGGG- -5' |
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5740 | 5' | -54.7 | NC_001806.1 | + | 27060 | 0.74 | 0.572033 |
Target: 5'- -cCUGGGGcccGAGGcccgUGCCCGGGCCCUg -3' miRNA: 3'- guGACUCCau-CUCU----ACGGGCUUGGGG- -5' |
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5740 | 5' | -54.7 | NC_001806.1 | + | 140224 | 0.74 | 0.589369 |
Target: 5'- -cCUGcuGGUAGAGGUGCugcgggagauucaaCUGAGCCCCg -3' miRNA: 3'- guGACu-CCAUCUCUACG--------------GGCUUGGGG- -5' |
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5740 | 5' | -54.7 | NC_001806.1 | + | 2808 | 0.73 | 0.612962 |
Target: 5'- gGCUG-GGcGGGGGcggGCUCGGGCCCCg -3' miRNA: 3'- gUGACuCCaUCUCUa--CGGGCUUGGGG- -5' |
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5740 | 5' | -54.7 | NC_001806.1 | + | 51592 | 0.72 | 0.664385 |
Target: 5'- gCGCUgggcGAGGUGGAGcUGCCCGGcgGCCa- -3' miRNA: 3'- -GUGA----CUCCAUCUCuACGGGCU--UGGgg -5' |
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5740 | 5' | -54.7 | NC_001806.1 | + | 26826 | 0.72 | 0.705095 |
Target: 5'- gCGCgggcGGGGaGGGGgcGCCgGAGCCCCc -3' miRNA: 3'- -GUGa---CUCCaUCUCuaCGGgCUUGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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