miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5745 3' -61.9 NC_001806.1 + 2797 0.66 0.605231
Target:  5'- gGGGC-GCCGcGGGCUGGGcgggggcgGGCUCgggCCc -3'
miRNA:   3'- gUCUGuCGGU-CCCGACCC--------UCGGGa--GG- -5'
5745 3' -61.9 NC_001806.1 + 2756 0.66 0.605231
Target:  5'- --cACGGCCacGGGGCgcgGGcGGGCCUgcgCCg -3'
miRNA:   3'- gucUGUCGG--UCCCGa--CC-CUCGGGa--GG- -5'
5745 3' -61.9 NC_001806.1 + 25521 0.66 0.605231
Target:  5'- gGGACGcGCCggggAGGGCUGGG-GCCg--- -3'
miRNA:   3'- gUCUGU-CGG----UCCCGACCCuCGGgagg -5'
5745 3' -61.9 NC_001806.1 + 23542 0.66 0.605231
Target:  5'- uGGGCGGCUGGcGGC-GGcAGCCC-CCg -3'
miRNA:   3'- gUCUGUCGGUC-CCGaCCcUCGGGaGG- -5'
5745 3' -61.9 NC_001806.1 + 22418 0.66 0.604243
Target:  5'- -uGGCGGCCGGccgcuucGGCUGGG-GCCUggCg -3'
miRNA:   3'- guCUGUCGGUC-------CCGACCCuCGGGagG- -5'
5745 3' -61.9 NC_001806.1 + 41367 0.67 0.595355
Target:  5'- cCAGGCcGCCAGGGggcaucacGGGGCCCUg- -3'
miRNA:   3'- -GUCUGuCGGUCCCgac-----CCUCGGGAgg -5'
5745 3' -61.9 NC_001806.1 + 18589 0.67 0.595355
Target:  5'- gGGuuucCAGCguaaCGGGGgaGGGGGCauCCUCCg -3'
miRNA:   3'- gUCu---GUCG----GUCCCgaCCCUCG--GGAGG- -5'
5745 3' -61.9 NC_001806.1 + 11018 0.67 0.595355
Target:  5'- aUAG-CAGCCGaucuucGGGUaaaaUGGGAGCCCa-- -3'
miRNA:   3'- -GUCuGUCGGU------CCCG----ACCCUCGGGagg -5'
5745 3' -61.9 NC_001806.1 + 26704 0.67 0.595355
Target:  5'- -cGugGGCCcggGGGGCgGGGcugacCCCUCCc -3'
miRNA:   3'- guCugUCGG---UCCCGaCCCuc---GGGAGG- -5'
5745 3' -61.9 NC_001806.1 + 59609 0.67 0.585503
Target:  5'- uGGuCAagcGCCGGGGCcuUGGG-GCCCcggCCg -3'
miRNA:   3'- gUCuGU---CGGUCCCG--ACCCuCGGGa--GG- -5'
5745 3' -61.9 NC_001806.1 + 118673 0.67 0.585503
Target:  5'- cCAGACgaucucGGCCAcGGCccGGGucGGCCCUCg -3'
miRNA:   3'- -GUCUG------UCGGUcCCGa-CCC--UCGGGAGg -5'
5745 3' -61.9 NC_001806.1 + 151262 0.67 0.585503
Target:  5'- cCGGGCccacGCCGGGcGgUGGGGGCCggggCCg -3'
miRNA:   3'- -GUCUGu---CGGUCC-CgACCCUCGGga--GG- -5'
5745 3' -61.9 NC_001806.1 + 20419 0.67 0.585503
Target:  5'- gGGACGGCCAacGGGCgcgcGGGGCUCg-- -3'
miRNA:   3'- gUCUGUCGGU--CCCGac--CCUCGGGagg -5'
5745 3' -61.9 NC_001806.1 + 102347 0.67 0.575684
Target:  5'- gGGACGucccCCGGGGCcgccGGGAGCaCC-CCg -3'
miRNA:   3'- gUCUGUc---GGUCCCGa---CCCUCG-GGaGG- -5'
5745 3' -61.9 NC_001806.1 + 25628 0.67 0.575684
Target:  5'- gGGAgGGCUGGGGCUGGGgagGGCUg--- -3'
miRNA:   3'- gUCUgUCGGUCCCGACCC---UCGGgagg -5'
5745 3' -61.9 NC_001806.1 + 113404 0.67 0.565902
Target:  5'- gGGGCcuggAGCUGGGGgUGGGAcGCCacgCCa -3'
miRNA:   3'- gUCUG----UCGGUCCCgACCCU-CGGga-GG- -5'
5745 3' -61.9 NC_001806.1 + 79735 0.67 0.565902
Target:  5'- -cGACcacCCAGGGUUGGcGGccgccuGCCCUCCc -3'
miRNA:   3'- guCUGuc-GGUCCCGACC-CU------CGGGAGG- -5'
5745 3' -61.9 NC_001806.1 + 23929 0.67 0.565902
Target:  5'- aGGACcuGGCCGGcGGCggggccuggGGGGGCCg-CCg -3'
miRNA:   3'- gUCUG--UCGGUC-CCGa--------CCCUCGGgaGG- -5'
5745 3' -61.9 NC_001806.1 + 72500 0.67 0.565902
Target:  5'- gGGGCgAGaUCGcGGGCcuggGGGAGCCCUgCg -3'
miRNA:   3'- gUCUG-UC-GGU-CCCGa---CCCUCGGGAgG- -5'
5745 3' -61.9 NC_001806.1 + 32955 0.67 0.565902
Target:  5'- gGGGCcccgGGCCGGGGCcccuUGGGuccgccggGGCCCcgggCCg -3'
miRNA:   3'- gUCUG----UCGGUCCCG----ACCC--------UCGGGa---GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.