miRNA display CGI


Results 1 - 18 of 18 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5745 5' -49.3 NC_001806.1 + 69744 0.66 0.998128
Target:  5'- uCCGGUCAAcccagccuuCUCCgCGAgacggcGCUCAUCUg -3'
miRNA:   3'- -GGUCAGUUu--------GAGGgGUU------UGAGUAGGa -5'
5745 5' -49.3 NC_001806.1 + 65134 0.66 0.997759
Target:  5'- uCCgAGUCcGugUCCUCcGAgUCAUCCg -3'
miRNA:   3'- -GG-UCAGuUugAGGGGuUUgAGUAGGa -5'
5745 5' -49.3 NC_001806.1 + 95783 0.66 0.99733
Target:  5'- cCCGGcCcuGCUCCCCAGcaUCAcCCUc -3'
miRNA:   3'- -GGUCaGuuUGAGGGGUUugAGUaGGA- -5'
5745 5' -49.3 NC_001806.1 + 50698 0.67 0.996836
Target:  5'- gCCAuUCuGGC-CgCCGGGCUCGUCCUg -3'
miRNA:   3'- -GGUcAGuUUGaGgGGUUUGAGUAGGA- -5'
5745 5' -49.3 NC_001806.1 + 21650 0.67 0.996268
Target:  5'- aCCucGUCGGACUCCggGucCUCGUCCUc -3'
miRNA:   3'- -GGu-CAGUUUGAGGggUuuGAGUAGGA- -5'
5745 5' -49.3 NC_001806.1 + 145157 0.67 0.99562
Target:  5'- cCCAcucGUCGAggGCgCCCCGGugUCGUUCa -3'
miRNA:   3'- -GGU---CAGUU--UGaGGGGUUugAGUAGGa -5'
5745 5' -49.3 NC_001806.1 + 63547 0.67 0.994882
Target:  5'- gCUGGUaGAGCUUCUCGAACUCcUCCc -3'
miRNA:   3'- -GGUCAgUUUGAGGGGUUUGAGuAGGa -5'
5745 5' -49.3 NC_001806.1 + 74903 0.68 0.992047
Target:  5'- gCUGGUCGGAcCUCCCCGAgGC-CGUUCg -3'
miRNA:   3'- -GGUCAGUUU-GAGGGGUU-UGaGUAGGa -5'
5745 5' -49.3 NC_001806.1 + 57201 0.68 0.990865
Target:  5'- aCGG-CGAACgCCCCAGACgcggCAUUCg -3'
miRNA:   3'- gGUCaGUUUGaGGGGUUUGa---GUAGGa -5'
5745 5' -49.3 NC_001806.1 + 60635 0.68 0.988089
Target:  5'- cUCGGagAuACUCaccccgCCCGAGCUCGUCCa -3'
miRNA:   3'- -GGUCagUuUGAG------GGGUUUGAGUAGGa -5'
5745 5' -49.3 NC_001806.1 + 5622 0.68 0.988089
Target:  5'- -uGGUCGAAC-CCCCGGccccGCcCAUCCg -3'
miRNA:   3'- ggUCAGUUUGaGGGGUU----UGaGUAGGa -5'
5745 5' -49.3 NC_001806.1 + 81255 0.69 0.984701
Target:  5'- cCCAGaagGAACUCCCCGGGcCUCAcggggUCCc -3'
miRNA:   3'- -GGUCag-UUUGAGGGGUUU-GAGU-----AGGa -5'
5745 5' -49.3 NC_001806.1 + 71991 0.7 0.966959
Target:  5'- --cGUCGAGCUCCCCA-ACU--UCCUc -3'
miRNA:   3'- gguCAGUUUGAGGGGUuUGAguAGGA- -5'
5745 5' -49.3 NC_001806.1 + 30335 0.71 0.959938
Target:  5'- cCCAGUCGcACUCguCCCuGGCUCAggCCg -3'
miRNA:   3'- -GGUCAGUuUGAG--GGGuUUGAGUa-GGa -5'
5745 5' -49.3 NC_001806.1 + 19257 0.71 0.95195
Target:  5'- aCCAGUCGGACgugUCgUCGGGgUCGUCCg -3'
miRNA:   3'- -GGUCAGUUUG---AGgGGUUUgAGUAGGa -5'
5745 5' -49.3 NC_001806.1 + 146724 0.71 0.951525
Target:  5'- cCUGGUCGAACagcauguUCCCCAcggGGgUCAUCCa -3'
miRNA:   3'- -GGUCAGUUUG-------AGGGGU---UUgAGUAGGa -5'
5745 5' -49.3 NC_001806.1 + 95152 0.71 0.94936
Target:  5'- gCGGUCAGGCcacgUCaCCCGAcgaucagaucgaggcGCUCAUCCg -3'
miRNA:   3'- gGUCAGUUUG----AG-GGGUU---------------UGAGUAGGa -5'
5745 5' -49.3 NC_001806.1 + 18529 1.1 0.011674
Target:  5'- uCCAGUCAAACUCCCCAAACUCAUCCUc -3'
miRNA:   3'- -GGUCAGUUUGAGGGGUUUGAGUAGGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.