miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5746 3' -48.6 NC_001806.1 + 68300 0.66 0.999488
Target:  5'- --cCAUGgcGGCGUuucUGUUGUCGggAACGg -3'
miRNA:   3'- guuGUAC--CCGCA---ACAACAGCagUUGC- -5'
5746 3' -48.6 NC_001806.1 + 32007 0.66 0.999214
Target:  5'- aGACGUGGGUGUUGggGggUGg-GGCGg -3'
miRNA:   3'- gUUGUACCCGCAACaaCa-GCagUUGC- -5'
5746 3' -48.6 NC_001806.1 + 15282 0.66 0.999034
Target:  5'- uGGCAUGGGgGgugUGUgGUCGggCGugGu -3'
miRNA:   3'- gUUGUACCCgCa--ACAaCAGCa-GUugC- -5'
5746 3' -48.6 NC_001806.1 + 3470 0.67 0.998207
Target:  5'- cCGGCcUGGGCGcggcgcccggcGUcGUCGUCGGCGu -3'
miRNA:   3'- -GUUGuACCCGCaa---------CAaCAGCAGUUGC- -5'
5746 3' -48.6 NC_001806.1 + 1490 0.67 0.997926
Target:  5'- cCAGCGgggGGGCGUcGUcGUCGggcucCAGCa -3'
miRNA:   3'- -GUUGUa--CCCGCAaCAaCAGCa----GUUGc -5'
5746 3' -48.6 NC_001806.1 + 15966 0.68 0.995904
Target:  5'- gGACucggGGGCGUUGgUGUCGaugguucCGGCGa -3'
miRNA:   3'- gUUGua--CCCGCAACaACAGCa------GUUGC- -5'
5746 3' -48.6 NC_001806.1 + 11299 0.69 0.991362
Target:  5'- cCAACAgggGaGGCGUUGggGUgggUGUCGugGg -3'
miRNA:   3'- -GUUGUa--C-CCGCAACaaCA---GCAGUugC- -5'
5746 3' -48.6 NC_001806.1 + 144613 0.7 0.985423
Target:  5'- gCAGCcgGGGCGgccaaGggG-CGUCGGCGa -3'
miRNA:   3'- -GUUGuaCCCGCaa---CaaCaGCAGUUGC- -5'
5746 3' -48.6 NC_001806.1 + 39801 0.72 0.949183
Target:  5'- aGAUAUGGGCGUgGUUG-CGcCAGCc -3'
miRNA:   3'- gUUGUACCCGCAaCAACaGCaGUUGc -5'
5746 3' -48.6 NC_001806.1 + 34009 0.75 0.862009
Target:  5'- gGGCGUGGGCGggGgUGcUCGUCGAuCGa -3'
miRNA:   3'- gUUGUACCCGCaaCaAC-AGCAGUU-GC- -5'
5746 3' -48.6 NC_001806.1 + 17312 1.09 0.015062
Target:  5'- cCAACAUGGGCGUUGUUGUCGUCAACGu -3'
miRNA:   3'- -GUUGUACCCGCAACAACAGCAGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.