miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5746 5' -53.7 NC_001806.1 + 51396 0.67 0.944254
Target:  5'- gCUCCUUaGCgCGGccGugGGCGCCUUGCg -3'
miRNA:   3'- -GAGGAAcUG-GUC--UugUUGCGGGACGg -5'
5746 5' -53.7 NC_001806.1 + 75568 0.67 0.944254
Target:  5'- -gCCgggGACCAcucccccagcGGGC-GCGCCCUGCa -3'
miRNA:   3'- gaGGaa-CUGGU----------CUUGuUGCGGGACGg -5'
5746 5' -53.7 NC_001806.1 + 53371 0.67 0.944254
Target:  5'- cCUCC-UGACCAagcuuaaacgcGAAgGACGCCggaGCCg -3'
miRNA:   3'- -GAGGaACUGGU-----------CUUgUUGCGGga-CGG- -5'
5746 5' -53.7 NC_001806.1 + 12754 0.67 0.944254
Target:  5'- uUCCgcaaaUGACCAGGGC--UGCCaggagaCUGCCg -3'
miRNA:   3'- gAGGa----ACUGGUCUUGuuGCGG------GACGG- -5'
5746 5' -53.7 NC_001806.1 + 91589 0.67 0.939583
Target:  5'- aCUCCa--ACCAGAcCGACguGCCCUGUa -3'
miRNA:   3'- -GAGGaacUGGUCUuGUUG--CGGGACGg -5'
5746 5' -53.7 NC_001806.1 + 59857 0.67 0.939583
Target:  5'- aUCC-UGGCCcGcACGACgGCCCagGCCg -3'
miRNA:   3'- gAGGaACUGGuCuUGUUG-CGGGa-CGG- -5'
5746 5' -53.7 NC_001806.1 + 79415 0.67 0.934667
Target:  5'- cCUCCUUGcCCcGGACccccuuuCGCCCaccGCCg -3'
miRNA:   3'- -GAGGAACuGGuCUUGuu-----GCGGGa--CGG- -5'
5746 5' -53.7 NC_001806.1 + 131203 0.67 0.929506
Target:  5'- -gCCUgccgGACCcacaGGcAGCuguACGCCCUGCUu -3'
miRNA:   3'- gaGGAa---CUGG----UC-UUGu--UGCGGGACGG- -5'
5746 5' -53.7 NC_001806.1 + 119855 0.67 0.929506
Target:  5'- aCUCCgUGGCguGGggcggGCGACGCgCCcGCCc -3'
miRNA:   3'- -GAGGaACUGguCU-----UGUUGCG-GGaCGG- -5'
5746 5' -53.7 NC_001806.1 + 91158 0.67 0.929506
Target:  5'- gUUCgagGGCCAGGACAcggccgcggcccGCGCCaacGCCg -3'
miRNA:   3'- gAGGaa-CUGGUCUUGU------------UGCGGga-CGG- -5'
5746 5' -53.7 NC_001806.1 + 23180 0.67 0.929506
Target:  5'- gCUgUUUGAcaaCCAGAGCcuGCGCCCccUGCUg -3'
miRNA:   3'- -GAgGAACU---GGUCUUGu-UGCGGG--ACGG- -5'
5746 5' -53.7 NC_001806.1 + 58244 0.67 0.924097
Target:  5'- -aCCUgcagucGCCGGAGCAcCGCCCgcaUGCUg -3'
miRNA:   3'- gaGGAac----UGGUCUUGUuGCGGG---ACGG- -5'
5746 5' -53.7 NC_001806.1 + 121541 0.68 0.920165
Target:  5'- gCUCCU-GGCCAGGAUcaccaaccacccgGggggcugcgaguccuGCGCCCcGCCg -3'
miRNA:   3'- -GAGGAaCUGGUCUUG-------------U---------------UGCGGGaCGG- -5'
5746 5' -53.7 NC_001806.1 + 31065 0.68 0.918442
Target:  5'- gUCCUggugGACCAGAcgggaaACAugGCGaCCCgGCUg -3'
miRNA:   3'- gAGGAa---CUGGUCU------UGU--UGC-GGGaCGG- -5'
5746 5' -53.7 NC_001806.1 + 23564 0.68 0.918442
Target:  5'- -cCCggGGcCCAGccacacGGCGGCGCCCgcgGCCg -3'
miRNA:   3'- gaGGaaCU-GGUC------UUGUUGCGGGa--CGG- -5'
5746 5' -53.7 NC_001806.1 + 55855 0.68 0.918442
Target:  5'- gCUCCacagGACCAcGGCAAgGCCCacccGCCc -3'
miRNA:   3'- -GAGGaa--CUGGUcUUGUUgCGGGa---CGG- -5'
5746 5' -53.7 NC_001806.1 + 28510 0.68 0.918442
Target:  5'- -cCUUUGACuCAGAcGCAGgGCCCggggucGCCg -3'
miRNA:   3'- gaGGAACUG-GUCU-UGUUgCGGGa-----CGG- -5'
5746 5' -53.7 NC_001806.1 + 101479 0.68 0.918442
Target:  5'- -aCCgccgGGCCGGGACuggaGCCC-GCCg -3'
miRNA:   3'- gaGGaa--CUGGUCUUGuug-CGGGaCGG- -5'
5746 5' -53.7 NC_001806.1 + 77776 0.68 0.912541
Target:  5'- gCUUCagcUGGCCcucAGCGACGCCCagGCCg -3'
miRNA:   3'- -GAGGa--ACUGGuc-UUGUUGCGGGa-CGG- -5'
5746 5' -53.7 NC_001806.1 + 31238 0.68 0.912541
Target:  5'- gCUgUUcGACCAGGGCAcccuaguggGCGCCCUGg- -3'
miRNA:   3'- -GAgGAaCUGGUCUUGU---------UGCGGGACgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.