Results 41 - 49 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5747 | 3' | -51.1 | NC_001806.1 | + | 3979 | 0.72 | 0.844775 |
Target: 5'- ------cUGGAGCcaccccaGGCCUCCGCGUCc -3' miRNA: 3'- uuuaaaaAUCUCG-------UCGGGGGCGCAGc -5' |
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5747 | 3' | -51.1 | NC_001806.1 | + | 99534 | 0.72 | 0.837099 |
Target: 5'- -------aAGGGCcccGGCCUCCGCGUUGg -3' miRNA: 3'- uuuaaaaaUCUCG---UCGGGGGCGCAGC- -5' |
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5747 | 3' | -51.1 | NC_001806.1 | + | 123189 | 0.72 | 0.828375 |
Target: 5'- -------cAGAGCAcCCCCCGgGUCGc -3' miRNA: 3'- uuuaaaaaUCUCGUcGGGGGCgCAGC- -5' |
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5747 | 3' | -51.1 | NC_001806.1 | + | 29938 | 0.73 | 0.781999 |
Target: 5'- -------cGGGGCGGCUCCCGCcaGUCGc -3' miRNA: 3'- uuuaaaaaUCUCGUCGGGGGCG--CAGC- -5' |
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5747 | 3' | -51.1 | NC_001806.1 | + | 147222 | 0.74 | 0.742182 |
Target: 5'- -------aAGAgGCGGCCCCCGCGggggUCGg -3' miRNA: 3'- uuuaaaaaUCU-CGUCGGGGGCGC----AGC- -5' |
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5747 | 3' | -51.1 | NC_001806.1 | + | 44135 | 0.74 | 0.721596 |
Target: 5'- -------cGGGGgGGCCUCCGCGUCa -3' miRNA: 3'- uuuaaaaaUCUCgUCGGGGGCGCAGc -5' |
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5747 | 3' | -51.1 | NC_001806.1 | + | 52825 | 0.75 | 0.690111 |
Target: 5'- -------gGGAGguGCCCCCGCGcCu -3' miRNA: 3'- uuuaaaaaUCUCguCGGGGGCGCaGc -5' |
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5747 | 3' | -51.1 | NC_001806.1 | + | 31175 | 0.76 | 0.624905 |
Target: 5'- --------cGAGUacccgacGGCCCCCGCGUCGg -3' miRNA: 3'- uuuaaaaauCUCG-------UCGGGGGCGCAGC- -5' |
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5747 | 3' | -51.1 | NC_001806.1 | + | 17214 | 1.08 | 0.008681 |
Target: 5'- uAAAUUUUUAGAGCAGCCCCCGCGUCGg -3' miRNA: 3'- -UUUAAAAAUCUCGUCGGGGGCGCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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