miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5748 3' -57.1 NC_001806.1 + 149800 0.67 0.848582
Target:  5'- gCUGGGGGCGGCccucaggccgGCGGGuacucgcUCCGGGGc -3'
miRNA:   3'- gGGCCUCUGCUGua--------CGUCC-------AGGUCCU- -5'
5748 3' -57.1 NC_001806.1 + 63292 0.67 0.841473
Target:  5'- gCCUGGAGACG-CAU-CGGG-CCAGa- -3'
miRNA:   3'- -GGGCCUCUGCuGUAcGUCCaGGUCcu -5'
5748 3' -57.1 NC_001806.1 + 3104 0.67 0.833399
Target:  5'- gCCgCGGAGcuCGGCAggcGCGGGUCCcgcggcagcgcGGGGc -3'
miRNA:   3'- -GG-GCCUCu-GCUGUa--CGUCCAGG-----------UCCU- -5'
5748 3' -57.1 NC_001806.1 + 28378 0.67 0.825149
Target:  5'- aCCGGGGGCGcCAUGUuaggGGGUgC-GGAa -3'
miRNA:   3'- gGGCCUCUGCuGUACG----UCCAgGuCCU- -5'
5748 3' -57.1 NC_001806.1 + 14609 0.68 0.808147
Target:  5'- gCCCGGaAGuCGcGCAUGCuucauGGGUCCcGGGc -3'
miRNA:   3'- -GGGCC-UCuGC-UGUACG-----UCCAGGuCCU- -5'
5748 3' -57.1 NC_001806.1 + 30639 0.68 0.808147
Target:  5'- gCCGGGGgggcGCGGCcaggGUGGGcCCGGGAc -3'
miRNA:   3'- gGGCCUC----UGCUGua--CGUCCaGGUCCU- -5'
5748 3' -57.1 NC_001806.1 + 35307 0.68 0.808147
Target:  5'- uUCGGAGGCGGCGcaacccgacGCGGGUUUAuGGAg -3'
miRNA:   3'- gGGCCUCUGCUGUa--------CGUCCAGGU-CCU- -5'
5748 3' -57.1 NC_001806.1 + 46461 0.68 0.808147
Target:  5'- gCCCGGAuGGCGGCGgucCAGcUCUGGGAc -3'
miRNA:   3'- -GGGCCU-CUGCUGUac-GUCcAGGUCCU- -5'
5748 3' -57.1 NC_001806.1 + 72494 0.68 0.808147
Target:  5'- cCCUGcGGGGCGAgAUcGCGGGcCUGGGGg -3'
miRNA:   3'- -GGGC-CUCUGCUgUA-CGUCCaGGUCCU- -5'
5748 3' -57.1 NC_001806.1 + 12828 0.68 0.799411
Target:  5'- gCCGGGGGaugguaaGGCGUcGCGGcGUCCuGGAu -3'
miRNA:   3'- gGGCCUCUg------CUGUA-CGUC-CAGGuCCU- -5'
5748 3' -57.1 NC_001806.1 + 141686 0.68 0.799411
Target:  5'- gCCGGGGugGugAUaUGGGUCCuGGc -3'
miRNA:   3'- gGGCCUCugCugUAcGUCCAGGuCCu -5'
5748 3' -57.1 NC_001806.1 + 1436 0.68 0.790529
Target:  5'- uCCCGGGcGGCGcCGgcgGCAGGgcccCCGGGc -3'
miRNA:   3'- -GGGCCU-CUGCuGUa--CGUCCa---GGUCCu -5'
5748 3' -57.1 NC_001806.1 + 83802 0.68 0.790529
Target:  5'- cUCCGGGGGCGAgGaggggGCGGGgucggCgCGGGAu -3'
miRNA:   3'- -GGGCCUCUGCUgUa----CGUCCa----G-GUCCU- -5'
5748 3' -57.1 NC_001806.1 + 34285 0.68 0.781509
Target:  5'- uCCCGGGGGCGGgAUG-GGGUUUAGcGGc -3'
miRNA:   3'- -GGGCCUCUGCUgUACgUCCAGGUC-CU- -5'
5748 3' -57.1 NC_001806.1 + 44788 0.68 0.781509
Target:  5'- gCUCGGuGAgGGCcgGgGGGgucgCCAGGAu -3'
miRNA:   3'- -GGGCCuCUgCUGuaCgUCCa---GGUCCU- -5'
5748 3' -57.1 NC_001806.1 + 5084 0.69 0.76309
Target:  5'- gCUCGGGGugGGCGgcgGCccgucggugGGGcCCGGGGa -3'
miRNA:   3'- -GGGCCUCugCUGUa--CG---------UCCaGGUCCU- -5'
5748 3' -57.1 NC_001806.1 + 137059 0.69 0.753707
Target:  5'- aCCCGGGGAcCGACcaGCcGuUCCAGGGa -3'
miRNA:   3'- -GGGCCUCU-GCUGuaCGuCcAGGUCCU- -5'
5748 3' -57.1 NC_001806.1 + 147681 0.69 0.753707
Target:  5'- cCCCGGGGGCcggGGCGcggggGCGGGcCCcGGAg -3'
miRNA:   3'- -GGGCCUCUG---CUGUa----CGUCCaGGuCCU- -5'
5748 3' -57.1 NC_001806.1 + 81620 0.69 0.744222
Target:  5'- aCCGGAGgucgggaaGCGAUAUGgGGGUgucggUCGGGAg -3'
miRNA:   3'- gGGCCUC--------UGCUGUACgUCCA-----GGUCCU- -5'
5748 3' -57.1 NC_001806.1 + 20414 0.69 0.744222
Target:  5'- gCCCGGGGACGGCcaaCGGGcgCgCGGGGc -3'
miRNA:   3'- -GGGCCUCUGCUGuacGUCCa-G-GUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.